Re: [Bioc-devel] GenomicFeatures export request
Awesome, thanks Hervé! Best, Leo On Wed, Dec 5, 2018 at 1:55 PM Pages, Herve wrote: > Hi Leo, > > This is done in GenomicFeatures 1.35.4: > > > https://github.com/Bioconductor/GenomicFeatures/commit/0b596c18b69f55d097aff0c6cdbbfc0b2993c4aa > > Cheers, > > H. > > > On 11/15/18 09:25, Leonardo Collado Torres wrote: > > Hi Hervé, > > > > Looking into the details of GenomicFeatures::exonicParts() I see that > > this function runs GenomicFeatures:::.tidy_exons(). Would it be > > possible to export this function? Looks like it'll be useful for some > > work we are doing. > > > > We can start using it without the function being exported, and well, > > if you prefer not to export it we could still use it in other packages > > (though a NOTE will show up in R CMD check). > > > > I don't think that we'll use GenomicFeatures:::.tidy_transcripts() > > directly although GenomicFeatures:::.tidy_exons() runs it. But well, > > maybe other users might be interested in your tidy set of functions. > > > > Best, > > Leo > > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpa...@fredhutch.org > Phone: (206) 667-5791 > Fax:(206) 667-1319 > > [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] GenomicFeatures export request
Hi Leo, This is done in GenomicFeatures 1.35.4: https://github.com/Bioconductor/GenomicFeatures/commit/0b596c18b69f55d097aff0c6cdbbfc0b2993c4aa Cheers, H. On 11/15/18 09:25, Leonardo Collado Torres wrote: > Hi Hervé, > > Looking into the details of GenomicFeatures::exonicParts() I see that > this function runs GenomicFeatures:::.tidy_exons(). Would it be > possible to export this function? Looks like it'll be useful for some > work we are doing. > > We can start using it without the function being exported, and well, > if you prefer not to export it we could still use it in other packages > (though a NOTE will show up in R CMD check). > > I don't think that we'll use GenomicFeatures:::.tidy_transcripts() > directly although GenomicFeatures:::.tidy_exons() runs it. But well, > maybe other users might be interested in your tidy set of functions. > > Best, > Leo -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax:(206) 667-1319 ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] email changed, can't access to my bioconductor package
Hi Yafeng, I have changed your email address in the app. You should be able to login with your new email address now. Please make sure to change the “maintainer” email address in the DESCRIPTION file of your package as well. Best, Nitesh > On Dec 4, 2018, at 9:19 PM, Yafeng Zhu wrote: > > Hi, > I am the developer for a Bioconductor package DEqMS. I recently relocated to > another institute. I don't have access to my previous work email: > yafeng@ki.se > > Now i can't update changes on my Bioconductor package. > During package submission, i created a github repository > https://github.com/yafeng/DEqMS , this github repo is linked to my private > email : yafeng@outlook.com > > Can you help me change the BiocCredential login email to > yafeng@outlook.com? > > bests, > Yafeng > > [[alternative HTML version deleted]] > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] email changed, can't access to my bioconductor package
Hi, I am the developer for a Bioconductor package DEqMS. I recently relocated to another institute. I don't have access to my previous work email: yafeng@ki.se Now i can't update changes on my Bioconductor package. During package submission, i created a github repository https://github.com/yafeng/DEqMS , this github repo is linked to my private email : yafeng@outlook.com Can you help me change the BiocCredential login email to yafeng@outlook.com? bests, Yafeng [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
