Re: [Bioc-devel] devel builds are down

2021-03-24 Thread Hervé Pagès 
Yes, the other devel builds (data-experiment, workflows, and long tests) 
are also affected (they were all relying on rex3). I'm slowly moving 
things to nebbiolo1. I'll do the workflows next.


H.

On 3/24/21 12:31 PM, James Perkins wrote:

Thanks for the info Hervé,

Has the workflow build been affected? There appears to have been no 
build since last Tuesday, I understand there *should* have been one last 
night:


https://bioconductor.org/checkResults/3.13/workflows-LATEST/ 



Cheers,

Jim



On Wed, 24 Mar 2021 at 19:25, Hervé Pagès > wrote:


The devel builds are up and running again, with nebbiolo1 instead of
rex3:

https://bioconductor.org/checkResults/3.13/bioc-LATEST/


The fate of rex3 is still unclear.

Cheers,
H.


On 3/19/21 1:56 PM, Hervé Pagès wrote:
 > Hi maintainers,
 >
 > If you've not noticed already, the build report for the BioC 3.13
builds
 > (devel builds) didn't get updated for the last 3 days:
 >
 > https://bioconductor.org/checkResults/3.13/bioc-LATEST/

 >
 > This is unusual. The reason is that our build machine rex3 has been
 > experiencing connectivity issues that have prevented the daily
builds
 > from running normally. The problem is being investigated and we'll
 > provide updates here as the situation evolves.
 >
 > Thanks for your patience and sorry for the inconvenience.
 >
 > H.
 >

-- 
Hervé Pagès


Bioconductor Core Team
hpages.on.git...@gmail.com 

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Department of Molecular Biology and Biochemistry 


Science Faculty, University of Malaga
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--
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Re: [Bioc-devel] devel builds are down

2021-03-24 Thread James Perkins 
Thanks for the info Hervé,

Has the workflow build been affected? There appears to have been no build
since last Tuesday, I understand there *should* have been one last night:

https://bioconductor.org/checkResults/3.13/workflows-LATEST/

Cheers,

Jim



On Wed, 24 Mar 2021 at 19:25, Hervé Pagès 
wrote:

> The devel builds are up and running again, with nebbiolo1 instead of rex3:
>
>https://bioconductor.org/checkResults/3.13/bioc-LATEST/
>
> The fate of rex3 is still unclear.
>
> Cheers,
> H.
>
>
> On 3/19/21 1:56 PM, Hervé Pagès wrote:
> > Hi maintainers,
> >
> > If you've not noticed already, the build report for the BioC 3.13 builds
> > (devel builds) didn't get updated for the last 3 days:
> >
> >https://bioconductor.org/checkResults/3.13/bioc-LATEST/
> >
> > This is unusual. The reason is that our build machine rex3 has been
> > experiencing connectivity issues that have prevented the daily builds
> > from running normally. The problem is being investigated and we'll
> > provide updates here as the situation evolves.
> >
> > Thanks for your patience and sorry for the inconvenience.
> >
> > H.
> >
>
> --
> Hervé Pagès
>
> Bioconductor Core Team
> hpages.on.git...@gmail.com
>
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> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>


-- 
James R Perkins PhD
Post-Doctoral Researcher, Rare Diseases Research Network (CIBERER)
Department of Molecular Biology and Biochemistry

Science Faculty, University of Malaga
29071 Malaga, Spain

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Re: [Bioc-devel] devel builds are down

2021-03-24 Thread Hervé Pagès 

The devel builds are up and running again, with nebbiolo1 instead of rex3:

  https://bioconductor.org/checkResults/3.13/bioc-LATEST/

The fate of rex3 is still unclear.

Cheers,
H.


On 3/19/21 1:56 PM, Hervé Pagès wrote:

Hi maintainers,

If you've not noticed already, the build report for the BioC 3.13 builds 
(devel builds) didn't get updated for the last 3 days:


   https://bioconductor.org/checkResults/3.13/bioc-LATEST/

This is unusual. The reason is that our build machine rex3 has been 
experiencing connectivity issues that have prevented the daily builds 
from running normally. The problem is being investigated and we'll 
provide updates here as the situation evolves.


Thanks for your patience and sorry for the inconvenience.

H.



--
Hervé Pagès

Bioconductor Core Team
hpages.on.git...@gmail.com

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Re: [Bioc-devel] adding maintainers to SpatialExperiment repo

2021-03-24 Thread Nitesh Turaga 
Hi all,

Both Lukas and Helena should have access now. 

Best,

Nitesh 

On 3/23/21, 7:52 PM, "Bioc-devel on behalf of Lukas Weber" 
 wrote:

Thanks Dario.

Could we please use my gmail address for this (this address), which is the
one I used for registering my Bioconductor account.

(Sorry for possible duplicate email - I previously tried replying from my
other address, which is not registered to the Bioc-devel list so email
possibly bounced.)

Best regards,
Lukas


On Tue, Mar 23, 2021 at 4:28 PM Dario Righelli 
wrote:

> Hi Guys,
>
> we'd like to add Helena Crowell and Lukas Weber (CC) as maintainers of
> the SpatialExperiment repo so that they can push on the upstream.
>
> Thanks,
> Dario
>
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Re: [Bioc-devel] No updates on Bioconductor landing page after making changes to package and bumping package version

2021-03-24 Thread Kern, Lori 
On git.bioconductor.org there it is showing no associated version bump.  I 
still see 1.1.0 .  The build system will only recognize package changes 
associated with a version bump in this case to 1.1.1.  Please push this change 
in the DESCRIPTION.


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Bioc-devel  on behalf of Xin Wang 

Sent: Wednesday, March 24, 2021 2:15 AM
To: bioc-devel 
Subject: [Bioc-devel] No updates on Bioconductor landing page after making 
changes to package and bumping package version

Hi,


I am one of the contributors of the MesKit Bioconductor package 
(https://secure-web.cisco.com/1AU1m4K-e3sQrju0TZU4vgj0cRbxVbugMbp_kedUq4nKegvYAFZO9jr_DHRbiAgYRw5-lFO5lxvmE9w1Nczag8BRN_s0V_TCWbdTFvMhrRwA6f8gtSm4GhhGCPbi3g17bO3EEY_ngIv1LL9rsutZwh72-dPX8XS0QdiD0oU3F8hRT9BHP6Hab4XNEXIIlhthjqqCuaMHsgcXPX9hupkghkaliy4uoJLStjDFDrS6DVw_gxyza6tV8XBz0obfL4qnfxj2nIxMaBAgpnC8LzSk4HwXudCXUJgvn82CYhgno37BQ3JVw7DDAmpNu7CLtsmmEiC3rRXSwfP0IgKANan_BWA/https%3A%2F%2Fbioconductor.org%2Fpackages%2Fdevel%2Fbioc%2Fhtml%2FMesKit.html).


We made some changes on the MesKit package few days ago and pushed to both the 
github and Biocondutor repo. However, no changes were found when we checked the 
Bioconductor landing page of MesKit. Although the latest version could be 
obtained when using `g...@git.bioconductor.org:packages/MesKit`, we still got 
the last version of MesKit when we typing `Biocmanager::install` to install 
MesKit.


Is there anything we can do to update the landing page of MesKit? Or we just 
need to wait for the review of Bioconductor team?


Thank you so much for your time.




Regards,
Xin
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[Bioc-devel] No updates on Bioconductor landing page after making changes to package and bumping package version

2021-03-24 Thread Xin Wang 
Hi,


I am one of the contributors of the MesKit Bioconductor package 
(https://bioconductor.org/packages/devel/bioc/html/MesKit.html).


We made some changes on the MesKit package few days ago and pushed to both the 
github and Biocondutor repo. However, no changes were found when we checked the 
Bioconductor landing page of MesKit. Although the latest version could be 
obtained when using `g...@git.bioconductor.org:packages/MesKit`, we still got 
the last version of MesKit when we typing `Biocmanager::install` to install 
MesKit.


Is there anything we can do to update the landing page of MesKit? Or we just 
need to wait for the review of Bioconductor team?


Thank you so much for your time.




Regards,
Xin
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