[Bioc-devel] python or python3 support in Linux
Dear all, I have tested python (Rbowtie2 version 1.15.3) and python3 (Rbowtie2 version 1.15.4). Both of the building results are the same: The python or python3 can not be found in Linux Server. Both versions of python works in Windows and Mac. Could anyone check the Linux server? Thanks, Zheng Wei [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] package submission DENIED by fallthru
Hello Community, I am submitting a repo ( https://github.com/Bioconductor/Contributions/issues/2299), I have fixed the repo but I had to rewrite the history to delete the files in the git that produce the failure in the check This is BiocCheckGitClone version 1.29.14. BiocCheckGitClone is a work in progress. Output and severity of issues may change. * Checking valid files... * ERROR: System Files found that should not be git tracked: src/RcppExports.o dev/latex_equations.log I am trying to push to upstream forcing (because of the history change) however Bioconductor does not let me do git push upstream master --force rstudio-1 258 % git push upstream master --force Counting objects: 820, done. Delta compression using up to 56 threads. Compressing objects: 100% (225/225), done. Writing objects: 100% (785/785), 3.42 MiB | 1.80 MiB/s, done. Total 785 (delta 574), reused 747 (delta 543) remote: Resolving deltas: 100% (574/574), completed with 22 local objects. remote: FATAL: + refs/heads/master packages/sccomp stemangiola DENIED by fallthru remote: error: hook declined to update refs/heads/master To g...@git.bioconductor.org:packages/sccomp.git ! [remote rejected] master -> master (hook declined) error: failed to push some refs to 'g...@git.bioconductor.org: packages/sccomp.git' Could someone please advise? Maybe I can start the submission over? Thanks! Best wishes. *Stefano * Stefano Mangiola | Postdoctoral fellow Papenfuss Laboratory The Walter Eliza Hall Institute of Medical Research +61 (0)466452544 [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] github email not registered with package
Hi all, I'm having some issues pushing to the bioc.git repo. I'm having the errors: ``` Enter passphrase for key '/home/ubuntu/.ssh/id_ed25519': FATAL: W any packages/comapr Rachael-rq DENIED by fallthru (or you mis-spelled the reponame) fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. ``` I could pull/fetch from `g...@git.bioconductor.org:packages/comapr` but not able to push. I notice that it is printing my previous github username `Rachael-rq` which was changed to `ruqianl`, not sure if that has something to do with it. I logged into the BiocCredentials and uploaded new SSH key there and also to my GitHub account, but I still do not have access to my package "comapr". My BiocCredential account was activated with the email I listed in the DESCRIPTION file which* isn't* associated with my github account. So I updated my BiocCredential account email to my github email now. I suspect my github email (xiaoru.b...@gmail.com) wasn't registered to my package "comapr"? Could someone advice how to fix this please? Thanks, Ruqian - My BiocCredential user profile now look like: - *Email:* xiaoru.b...@gmail.com - *GitHub Username:* ruqianl - [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] python or python3 support
Hi Jennifer, I have tested python (Rbowtie2 version 1.15.3) and python3 (Rbowtie2 version 1.15.4). Both of the building results are the same. The python or python3 can not be found in Linux Server. Both versions of python works in Windows and Mac. Could you please check the Linux server? Thanks, Zheng Zheng, I talked to Herve about your issue as well as the build machines. You should use `python` for Windows and `python3` for Linux and Mac. Jennifer Wokaty Bioconductor Core Team Waldron Lab CUNY Graduate School of Public Health and Health Policy [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
