[Bioc-devel] Build issue on nebbiolo2 for DEWSeq

2023-11-14 Thread Biohentze
Dear all,

We are facing build issue on nebbiolo2 on our vignette for the package DEWSeq. 
The issue is that we use magittr pipe (%>%) in the vignette and the issue 
occurs only on the linux machine.
Checks, builds and installation completes successfully on windows and mac. Here 
is the complete build report: 
https://master.bioconductor.org/checkResults/3.18/bioc-LATEST/DEWSeq/nebbiolo2-checksrc.html

 Could you please look into it  ?

Thank you in advance,
Sudeep.

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Re: [Bioc-devel] DEWSeq: Multiple platform build failures

2020-01-21 Thread Biohentze
Hi Lori,
Didn't realize that it was reported before.
Many thanks for your response
Sudeep.
On Tue, 2020-01-21 at 14:12 +, Shepherd, Lori wrote:
> Please see Martin's response 
> 
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> 
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> https://stat.ethz.ch/pipermail/bioc-devel/2020-January/016049.html
> 
> 
> 
> 
> 
> 
> 
> It looks like there is progress on the open issue on knitr so hopefully this 
> should clear up soon.  
> 
> https://github.com/yihui/knitr/issues/1797
> 
> 
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> I don't believe you have to do anything on your end at this time and it is 
> indeed an issue with a dependency. 
> 
> 
> 
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> 
> Cheers
> 
> 
> 
> 
> 
> 
> Lori Shepherd
> Bioconductor Core Team
> Roswell Park Comprehensive Cancer Center
> Department of Biostatistics & Bioinformatics
> Elm & Carlton Streets
> Buffalo, New York 14263
> 
> 
> 
> 
> From: Bioc-devel  on behalf of Biohentze 
> 
> 
> Sent: Tuesday, January 21, 2020 2:10 AM
> 
> To: bioc-devel@r-project.org 
> 
> Subject: [Bioc-devel] DEWSeq: Multiple platform build failures
>  
> 
> 
> Hi all,
> 
> 
> 
> We received a build report that our package failed to build on all the 
> platforms (
> 
> https://master.bioconductor.org/checkResults/3.10/bioc-LATEST/DEWSeq/malbec1-buildsrc.html).
>  There has been a similar mail last Friday, but that wasthe
>  first time we received such a build report. 
> 
> But as you can see from the build report, the last change to the package was 
> on October 29th and we only started receiving build failure reports last
> 
> Friday. So most likely this is a build system issue. Could you please take a 
> look at this issue ?
> 
> 
> 
> Thank you.
> 
> 
> 
> Sudeep.
> 
> 
> 
> [[alternative HTML version deleted]]
> 
> 
> 
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[Bioc-devel] DEWSeq: Multiple platform build failures

2020-01-20 Thread Biohentze
Hi all,

We received a build report that our package failed to build on all the 
platforms (
https://master.bioconductor.org/checkResults/3.10/bioc-LATEST/DEWSeq/malbec1-buildsrc.html).
 There has been a similar mail last Friday, but that wasthe first time we 
received such a build report. 
But as you can see from the build report, the last change to the package was on 
October 29th and we only started receiving build failure reports last
Friday. So most likely this is a build system issue. Could you please take a 
look at this issue ?

Thank you.

Sudeep.

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