Re: [Bioc-devel] Build issue on nebbiolo2 for DEWSeq
Hi Sudeep, I don't see magrittr in any of the Depends, Imports, or Suggests field of DEWSeq. Remember that any function or symbol you use from another package requires that you declare that package in one of these fields. In this case, since you only use %>% in the vignette, then you only need to put magrittr in the Suggests field. You don't need to import it. However, as suggested by Kristian, why not just use R basic pipe "|>" instead? Best, H. On 11/14/23 23:23, Biohentze wrote: > Dear all, > > We are facing build issue on nebbiolo2 on our vignette for the package > DEWSeq. The issue is that we use magittr pipe (%>%) in the vignette and the > issue occurs only on the linux machine. > Checks, builds and installation completes successfully on windows and mac. > Here is the complete build > report:https://master.bioconductor.org/checkResults/3.18/bioc-LATEST/DEWSeq/nebbiolo2-checksrc.html > > Could you please look into it ? > > Thank you in advance, > Sudeep. > > [[alternative HTML version deleted]] > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel -- Hervé Pagès Bioconductor Core Team hpages.on.git...@gmail.com [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] Build issue on nebbiolo2 for DEWSeq
Dear Sudeep, Have you tried to use the R basic pipe "|>" instead of the magrittr pipe? If you use it directly in your R function you could add in the corresponding function the following line: @importFrom magrittr %>% Best regards Kristian -- Kristian Ullrich, Ph.D. Max Planck Institute For Evolutionary Biology Scientific IT group Department of Evolutionary Genetics August Thienemann Str. 2 24306 Plön Germany +49 4522 763 313 ullr...@evolbio.mpg.de “Und was wir, was wir haben wollen, es liegt vor uns. Und was wir, was wir haben wollen, es gehört uns, gehört uns nicht.” (Aliens; Die Höchste Eisenbahn) -- CONFIDENTIALITY NOTICE: The contents of this email message and any attachments are intended solely for the addressee(s) and may contain confidential and/or privileged information and may be legally protected from disclosure. If you are not the intended recipient, you are hereby notified that any use, dissemination, copying, or storage of this message or its attachments is strictly prohibited. > On 15. Nov 2023, at 08:23, Biohentze wrote: > > Dear all, > > We are facing build issue on nebbiolo2 on our vignette for the package > DEWSeq. The issue is that we use magittr pipe (%>%) in the vignette and the > issue occurs only on the linux machine. > Checks, builds and installation completes successfully on windows and mac. > Here is the complete build report: > https://master.bioconductor.org/checkResults/3.18/bioc-LATEST/DEWSeq/nebbiolo2-checksrc.html > > Could you please look into it ? > > Thank you in advance, > Sudeep. > > [[alternative HTML version deleted]] > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] Build issue on nebbiolo2 for DEWSeq
Dear all, We are facing build issue on nebbiolo2 on our vignette for the package DEWSeq. The issue is that we use magittr pipe (%>%) in the vignette and the issue occurs only on the linux machine. Checks, builds and installation completes successfully on windows and mac. Here is the complete build report: https://master.bioconductor.org/checkResults/3.18/bioc-LATEST/DEWSeq/nebbiolo2-checksrc.html Could you please look into it ? Thank you in advance, Sudeep. [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
