Re: [Bioc-devel] GenomicFeatures export request
Awesome, thanks Hervé! Best, Leo On Wed, Dec 5, 2018 at 1:55 PM Pages, Herve wrote: > Hi Leo, > > This is done in GenomicFeatures 1.35.4: > > > https://github.com/Bioconductor/GenomicFeatures/commit/0b596c18b69f55d097aff0c6cdbbfc0b2993c4aa > > Cheers, > > H. > > > On 11/15/18 09:25, Leonardo Collado Torres wrote: > > Hi Hervé, > > > > Looking into the details of GenomicFeatures::exonicParts() I see that > > this function runs GenomicFeatures:::.tidy_exons(). Would it be > > possible to export this function? Looks like it'll be useful for some > > work we are doing. > > > > We can start using it without the function being exported, and well, > > if you prefer not to export it we could still use it in other packages > > (though a NOTE will show up in R CMD check). > > > > I don't think that we'll use GenomicFeatures:::.tidy_transcripts() > > directly although GenomicFeatures:::.tidy_exons() runs it. But well, > > maybe other users might be interested in your tidy set of functions. > > > > Best, > > Leo > > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpa...@fredhutch.org > Phone: (206) 667-5791 > Fax:(206) 667-1319 > > [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] GenomicFeatures export request
Hi Leo, This is done in GenomicFeatures 1.35.4: https://github.com/Bioconductor/GenomicFeatures/commit/0b596c18b69f55d097aff0c6cdbbfc0b2993c4aa Cheers, H. On 11/15/18 09:25, Leonardo Collado Torres wrote: > Hi Hervé, > > Looking into the details of GenomicFeatures::exonicParts() I see that > this function runs GenomicFeatures:::.tidy_exons(). Would it be > possible to export this function? Looks like it'll be useful for some > work we are doing. > > We can start using it without the function being exported, and well, > if you prefer not to export it we could still use it in other packages > (though a NOTE will show up in R CMD check). > > I don't think that we'll use GenomicFeatures:::.tidy_transcripts() > directly although GenomicFeatures:::.tidy_exons() runs it. But well, > maybe other users might be interested in your tidy set of functions. > > Best, > Leo -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax:(206) 667-1319 ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] GenomicFeatures export request
Hi Hervé, Looking into the details of GenomicFeatures::exonicParts() I see that this function runs GenomicFeatures:::.tidy_exons(). Would it be possible to export this function? Looks like it'll be useful for some work we are doing. We can start using it without the function being exported, and well, if you prefer not to export it we could still use it in other packages (though a NOTE will show up in R CMD check). I don't think that we'll use GenomicFeatures:::.tidy_transcripts() directly although GenomicFeatures:::.tidy_exons() runs it. But well, maybe other users might be interested in your tidy set of functions. Best, Leo ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
