Re: [Bioc-devel] Is my package suitable for Bioconductor?

2023-10-26 Thread Timothy Barry 
Hi Kasper,

It is good to hear from you. Thank you for your generosity. I will email you to 
set up a time to chat.

I will drop any further questions for the community in this thread. Thanks all!

All the best,
Tim

> On Oct 24, 2023, at 11:54 AM, Kasper Daniel Hansen 
>  wrote:
> 
> I am happy to talk on Zoom about this, since I have some interest in this 
> work. 
> 
> Best,
> Kasper
> 
> On Tue, Oct 24, 2023 at 9:21 AM Vincent Carey  > wrote:
>> agreedthis discussion is best discussed in the open
>> 
>> On Tue, Oct 24, 2023 at 8:57 AM Lluís Revilla > >
>> wrote:
>> 
>> > Hi Tim,
>> >
>> > I think there is a mentorship program for cases like this (I am not sure if
>> > it still accepts mentees):
>> > https://www.bioconductor.org/developers/new-developer-program/
>> > I also recommend the book the Bioconductor community wrote to help with
>> > submissions: https://contributions.bioconductor.org/index.html
>> >
>> > Questions are usually posted here, which will not only help you but future
>> > users/potential contributors with the same doubts/questions.
>> > So I would recommend that if the previous resources do not help to just
>> > list your questions here for anyone to chime in.
>> >
>> > If you want more feedback, you  may address the question to someone you
>> > know from the community or using the slack to ask some questions are also
>> > good options.
>> >
>> > Looking forward to seeing the package in Bioconductor.
>> >
>> > I hope this helps,
>> >
>> > Lluís
>> >
>> > On Tue, 24 Oct 2023 at 12:46, Timothy Barry > > >
>> > wrote:
>> >
>> > > Hello,
>> > >
>> > > My collaborators and I are considering submitting our R package for
>> > > single-cell CRISPR screen data analysis to Bioconductor (package website
>> > <
>> > > https://katsevich-lab.github.io/sceptre/> and e-book <
>> > > https://timothy-barry.github.io/sceptre-book/>). We have several
>> > > questions about the suitability of our package for Bioconductor and
>> > changes
>> > > that we might need to implement to make our package more consistent with
>> > > Bioconductor package guidelines. Would a member of the Bioconductor team
>> > be
>> > > available for a brief (30-60 minute) Zoom call to discuss these issues?
>> > We
>> > > would very much appreciate the help.
>> > >
>> > > Thank you greatly,
>> > > Tim Barry
>> > >
>> > > Timothy Barry, PhD
>> > > University of Pennsylvania
>> > > Department of Statistics and Data Science
>> > > Postdoctoral researcher
>> > >
>> > >
>> > > [[alternative HTML version deleted]]
>> > >
>> > > ___
>> > > Bioc-devel@r-project.org  mailing list
>> > > https://stat.ethz.ch/mailman/listinfo/bioc-devel
>> > >
>> >
>> > [[alternative HTML version deleted]]
>> >
>> > ___
>> > Bioc-devel@r-project.org  mailing list
>> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
>> >
>> 
>> -- 
>> The information in this e-mail is intended only for t...{{dropped:15}}

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Re: [Bioc-devel] Is my package suitable for Bioconductor?

2023-10-24 Thread Kasper Daniel Hansen 
I am happy to talk on Zoom about this, since I have some interest in this
work.

Best,
Kasper

On Tue, Oct 24, 2023 at 9:21 AM Vincent Carey 
wrote:

> agreedthis discussion is best discussed in the open
>
> On Tue, Oct 24, 2023 at 8:57 AM Lluís Revilla 
> wrote:
>
> > Hi Tim,
> >
> > I think there is a mentorship program for cases like this (I am not sure
> if
> > it still accepts mentees):
> > https://www.bioconductor.org/developers/new-developer-program/
> > I also recommend the book the Bioconductor community wrote to help with
> > submissions: https://contributions.bioconductor.org/index.html
> >
> > Questions are usually posted here, which will not only help you but
> future
> > users/potential contributors with the same doubts/questions.
> > So I would recommend that if the previous resources do not help to just
> > list your questions here for anyone to chime in.
> >
> > If you want more feedback, you  may address the question to someone you
> > know from the community or using the slack to ask some questions are also
> > good options.
> >
> > Looking forward to seeing the package in Bioconductor.
> >
> > I hope this helps,
> >
> > Lluís
> >
> > On Tue, 24 Oct 2023 at 12:46, Timothy Barry 
> > wrote:
> >
> > > Hello,
> > >
> > > My collaborators and I are considering submitting our R package for
> > > single-cell CRISPR screen data analysis to Bioconductor (package
> website
> > <
> > > https://katsevich-lab.github.io/sceptre/> and e-book <
> > > https://timothy-barry.github.io/sceptre-book/>). We have several
> > > questions about the suitability of our package for Bioconductor and
> > changes
> > > that we might need to implement to make our package more consistent
> with
> > > Bioconductor package guidelines. Would a member of the Bioconductor
> team
> > be
> > > available for a brief (30-60 minute) Zoom call to discuss these issues?
> > We
> > > would very much appreciate the help.
> > >
> > > Thank you greatly,
> > > Tim Barry
> > >
> > > Timothy Barry, PhD
> > > University of Pennsylvania
> > > Department of Statistics and Data Science
> > > Postdoctoral researcher
> > >
> > >
> > > [[alternative HTML version deleted]]
> > >
> > > ___
> > > Bioc-devel@r-project.org mailing list
> > > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> > >
> >
> > [[alternative HTML version deleted]]
> >
> > ___
> > Bioc-devel@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >
>
> --
> The information in this e-mail is intended only for th...{{dropped:15}}

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Re: [Bioc-devel] Is my package suitable for Bioconductor?

2023-10-24 Thread Vincent Carey 
agreedthis discussion is best discussed in the open

On Tue, Oct 24, 2023 at 8:57 AM Lluís Revilla 
wrote:

> Hi Tim,
>
> I think there is a mentorship program for cases like this (I am not sure if
> it still accepts mentees):
> https://www.bioconductor.org/developers/new-developer-program/
> I also recommend the book the Bioconductor community wrote to help with
> submissions: https://contributions.bioconductor.org/index.html
>
> Questions are usually posted here, which will not only help you but future
> users/potential contributors with the same doubts/questions.
> So I would recommend that if the previous resources do not help to just
> list your questions here for anyone to chime in.
>
> If you want more feedback, you  may address the question to someone you
> know from the community or using the slack to ask some questions are also
> good options.
>
> Looking forward to seeing the package in Bioconductor.
>
> I hope this helps,
>
> Lluís
>
> On Tue, 24 Oct 2023 at 12:46, Timothy Barry 
> wrote:
>
> > Hello,
> >
> > My collaborators and I are considering submitting our R package for
> > single-cell CRISPR screen data analysis to Bioconductor (package website
> <
> > https://katsevich-lab.github.io/sceptre/> and e-book <
> > https://timothy-barry.github.io/sceptre-book/>). We have several
> > questions about the suitability of our package for Bioconductor and
> changes
> > that we might need to implement to make our package more consistent with
> > Bioconductor package guidelines. Would a member of the Bioconductor team
> be
> > available for a brief (30-60 minute) Zoom call to discuss these issues?
> We
> > would very much appreciate the help.
> >
> > Thank you greatly,
> > Tim Barry
> >
> > Timothy Barry, PhD
> > University of Pennsylvania
> > Department of Statistics and Data Science
> > Postdoctoral researcher
> >
> >
> > [[alternative HTML version deleted]]
> >
> > ___
> > Bioc-devel@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >
>
> [[alternative HTML version deleted]]
>
> ___
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>

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Re: [Bioc-devel] Is my package suitable for Bioconductor?

2023-10-24 Thread Lluís Revilla 
Hi Tim,

I think there is a mentorship program for cases like this (I am not sure if
it still accepts mentees):
https://www.bioconductor.org/developers/new-developer-program/
I also recommend the book the Bioconductor community wrote to help with
submissions: https://contributions.bioconductor.org/index.html

Questions are usually posted here, which will not only help you but future
users/potential contributors with the same doubts/questions.
So I would recommend that if the previous resources do not help to just
list your questions here for anyone to chime in.

If you want more feedback, you  may address the question to someone you
know from the community or using the slack to ask some questions are also
good options.

Looking forward to seeing the package in Bioconductor.

I hope this helps,

Lluís

On Tue, 24 Oct 2023 at 12:46, Timothy Barry  wrote:

> Hello,
>
> My collaborators and I are considering submitting our R package for
> single-cell CRISPR screen data analysis to Bioconductor (package website <
> https://katsevich-lab.github.io/sceptre/> and e-book <
> https://timothy-barry.github.io/sceptre-book/>). We have several
> questions about the suitability of our package for Bioconductor and changes
> that we might need to implement to make our package more consistent with
> Bioconductor package guidelines. Would a member of the Bioconductor team be
> available for a brief (30-60 minute) Zoom call to discuss these issues? We
> would very much appreciate the help.
>
> Thank you greatly,
> Tim Barry
>
> Timothy Barry, PhD
> University of Pennsylvania
> Department of Statistics and Data Science
> Postdoctoral researcher
>
>
> [[alternative HTML version deleted]]
>
> ___
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>

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[Bioc-devel] Is my package suitable for Bioconductor?

2023-10-24 Thread Timothy Barry 
Hello,

My collaborators and I are considering submitting our R package for single-cell 
CRISPR screen data analysis to Bioconductor (package website 
 and e-book 
). We have several questions 
about the suitability of our package for Bioconductor and changes that we might 
need to implement to make our package more consistent with Bioconductor package 
guidelines. Would a member of the Bioconductor team be available for a brief 
(30-60 minute) Zoom call to discuss these issues? We would very much appreciate 
the help.

Thank you greatly,
Tim Barry

Timothy Barry, PhD
University of Pennsylvania
Department of Statistics and Data Science
Postdoctoral researcher


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