Re: [Bioc-devel] Permission denied when fetching from BioC GitHub repository

2018-01-24 Thread Federico C 
Hi Nitesh,

thanks a lot for your message. It makes perfect sense.

Best wishes,

Federico

> On 24 Jan 2018, at 17:33, Turaga, Nitesh  
> wrote:
> 
> Hi 
> 
> Only packages maintained by Bioconductor are at that location 
> gitHub.com/Bioconductor.  Your package is not maintained by the core-team in 
> Bioconductor, so, it does not belong in that location.
> 
> We follow the same process as all the maintainers, we have a Github repo to 
> take advantage of the social coding practices, and the canonical Bioconductor 
> git server which acts as the central server for bioconductor packages.
> 
> I hope this answers your question.
> 
> Best,
> 
> Nitesh 
> 
>> On Jan 24, 2018, at 11:24 AM, Federico C  wrote:
>> 
>> Hi Valerie,
>> 
>> the ssh key has now been setup and it works. I had some issues with merging 
>> but at the end I decided to force BioC master to GitHub master (following 
>> https://bioconductor.org/developers/how-to/git/abandon-changes/#force-bioconductor--to-github-
>>  
>> ).
>>  Afterwards, I pushed the bug fix to both origin and upstream remotes 
>> (master branch). Indeed:
>> 
>> | => git status
>> On branch master
>> Your branch is up-to-date with 'upstream/master'.
>> 
>> nothing to commit, working tree clean
>> 
>> However, shouldn’t wavClusteR be listed at https://github.com/Bioconductor 
>>  at this point?
>> 
>> Thanks a lot for your help.
>> Best wishes,
>> 
>> Federico
>> 
>> 
>> 
>> 
>> 
>>> On 23 Jan 2018, at 20:50, Federico C  wrote:
>>> 
>>> Hi Valerie,
>>> 
>>> done. Thanks a lot,
>>> 
>>> Federico
>>> 
 On 23 Jan 2018, at 20:18, Obenchain, Valerie 
 > wrote:
 
 Hi Federico,
 
 We don't have an ssh key on file for you. Please add one by following 
 instructions at the link below and use the ID of 'f.comoglio':
 
 https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform
  
 
 
 You will get an email in the next 24 hours if the submission was 
 successful.
 
 Valerie
 
 On 01/23/2018 09:47 AM, Federico C wrote:
> Dear all,
> 
> I’m trying to push a bug fix for wavClusteR to the BioC GitHub 
> repository. I currently pushed the latest package version to the devel 
> and master branch of my GitHub repository 
> (https://github.com/FedericoComoglio/wavClusteR 
>  
>  
> ).
> 
> To sync these changes with the bioC GitHub repository, I have followed 
> the documentation at https://bioconductor.org/developers/how-to/git/ 
>  
>  
>  . However, even though 
> I added an upstream remote to my repository and added a public key as 
> described, when I fetch updates from all (see 
> https://bioconductor.org/developers/how-to/git/sync-existing-repositories/
>  
> 
>  
> 
>  
> )
>  I get
> 
> | => git fetch --all
> Fetching origin
> Fetching upstream
> g...@git.bioconductor.org  
>  : 
> Permission denied (publickey).
> fatal: Could not read from remote repository.
> 
> Please make sure you have the correct access rights
> and the repository exists.
> error: Could not fetch upstream
> 
> Could you please help me with this issue?
> 
> Thanks a lot for your time and patience.
> 
> Best wishes,
> Federico
>   [[alternative HTML version deleted]]
> 
> ___
> Bioc-devel@r-project.org  mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel 
> 
 
 
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 information. If you are not the intended recipient(s), or the employee or 
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Re: [Bioc-devel] Permission denied when fetching from BioC GitHub repository

2018-01-24 Thread Federico C 
Hi Valerie,

the ssh key has now been setup and it works. I had some issues with merging but 
at the end I decided to force BioC master to GitHub master (following 
https://bioconductor.org/developers/how-to/git/abandon-changes/#force-bioconductor--to-github-
 
).
 Afterwards, I pushed the bug fix to both origin and upstream remotes (master 
branch). Indeed:

| => git status
On branch master
Your branch is up-to-date with 'upstream/master'.

nothing to commit, working tree clean

However, shouldn’t wavClusteR be listed at https://github.com/Bioconductor 
 at this point?

Thanks a lot for your help.
Best wishes,

Federico





> On 23 Jan 2018, at 20:50, Federico C  wrote:
> 
> Hi Valerie,
> 
> done. Thanks a lot,
> 
> Federico
> 
>> On 23 Jan 2018, at 20:18, Obenchain, Valerie 
>> > > wrote:
>> 
>> Hi Federico,
>> 
>> We don't have an ssh key on file for you. Please add one by following 
>> instructions at the link below and use the ID of 'f.comoglio':
>> 
>> https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform
>>  
>> 
>> 
>> You will get an email in the next 24 hours if the submission was successful.
>> 
>> Valerie
>> 
>> On 01/23/2018 09:47 AM, Federico C wrote:
>>> Dear all,
>>> 
>>> I’m trying to push a bug fix for wavClusteR to the BioC GitHub repository. 
>>> I currently pushed the latest package version to the devel and master 
>>> branch of my GitHub repository 
>>> (https://github.com/FedericoComoglio/wavClusteR 
>>>  
>>>  
>>> ).
>>> 
>>> To sync these changes with the bioC GitHub repository, I have followed the 
>>> documentation at https://bioconductor.org/developers/how-to/git/ 
>>>  
>>>  
>>>  . However, even though I 
>>> added an upstream remote to my repository and added a public key as 
>>> described, when I fetch updates from all (see 
>>> https://bioconductor.org/developers/how-to/git/sync-existing-repositories/ 
>>> 
>>>  
>>> 
>>>  
>>> )
>>>  I get
>>> 
>>> | => git fetch --all
>>> Fetching origin
>>> Fetching upstream
>>> g...@git.bioconductor.org  
>>>  : 
>>> Permission denied (publickey).
>>> fatal: Could not read from remote repository.
>>> 
>>> Please make sure you have the correct access rights
>>> and the repository exists.
>>> error: Could not fetch upstream
>>> 
>>> Could you please help me with this issue?
>>> 
>>> Thanks a lot for your time and patience.
>>> 
>>> Best wishes,
>>> Federico
>>> [[alternative HTML version deleted]]
>>> 
>>> ___
>>> Bioc-devel@r-project.org  mailing list
>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel 
>>> 
>> 
>> 
>> This email message may contain legally privileged and/or confidential 
>> information. If you are not the intended recipient(s), or the employee or 
>> agent responsible for the delivery of this message to the intended 
>> recipient(s), you are hereby notified that any disclosure, copying, 
>> distribution, or use of this email message is prohibited. If you have 
>> received this message in error, please notify the sender immediately by 
>> e-mail and delete this email message from your computer. Thank you.
> 


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Re: [Bioc-devel] Permission denied when fetching from BioC GitHub repository

2018-01-23 Thread Federico C 
Hi Valerie,

done. Thanks a lot,

Federico

> On 23 Jan 2018, at 20:18, Obenchain, Valerie 
>  wrote:
> 
> Hi Federico,
> 
> We don't have an ssh key on file for you. Please add one by following 
> instructions at the link below and use the ID of 'f.comoglio':
> 
> https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform
>  
> 
> 
> You will get an email in the next 24 hours if the submission was successful.
> 
> Valerie
> 
> On 01/23/2018 09:47 AM, Federico C wrote:
>> Dear all,
>> 
>> I’m trying to push a bug fix for wavClusteR to the BioC GitHub repository. I 
>> currently pushed the latest package version to the devel and master branch 
>> of my GitHub repository (https://github.com/FedericoComoglio/wavClusteR 
>>  
>>  
>> ).
>> 
>> To sync these changes with the bioC GitHub repository, I have followed the 
>> documentation at https://bioconductor.org/developers/how-to/git/ 
>>  
>>  
>>  . However, even though I 
>> added an upstream remote to my repository and added a public key as 
>> described, when I fetch updates from all (see 
>> https://bioconductor.org/developers/how-to/git/sync-existing-repositories/ 
>>  
>>  
>> )
>>  I get
>> 
>> | => git fetch --all
>> Fetching origin
>> Fetching upstream
>> g...@git.bioconductor.org  
>>  : 
>> Permission denied (publickey).
>> fatal: Could not read from remote repository.
>> 
>> Please make sure you have the correct access rights
>> and the repository exists.
>> error: Could not fetch upstream
>> 
>> Could you please help me with this issue?
>> 
>> Thanks a lot for your time and patience.
>> 
>> Best wishes,
>> Federico
>>  [[alternative HTML version deleted]]
>> 
>> ___
>> Bioc-devel@r-project.org  mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel 
>> 
> 
> 
> This email message may contain legally privileged and/or confidential 
> information. If you are not the intended recipient(s), or the employee or 
> agent responsible for the delivery of this message to the intended 
> recipient(s), you are hereby notified that any disclosure, copying, 
> distribution, or use of this email message is prohibited. If you have 
> received this message in error, please notify the sender immediately by 
> e-mail and delete this email message from your computer. Thank you.


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Re: [Bioc-devel] Permission denied when fetching from BioC GitHub repository

2018-01-23 Thread Obenchain, Valerie 
Hi Federico,

We don't have an ssh key on file for you. Please add one by following 
instructions at the link below and use the ID of 'f.comoglio':

https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform

You will get an email in the next 24 hours if the submission was successful.

Valerie

On 01/23/2018 09:47 AM, Federico C wrote:

Dear all,

I�m trying to push a bug fix for wavClusteR to the BioC GitHub repository. I 
currently pushed the latest package version to the devel and master branch of 
my GitHub repository (https://github.com/FedericoComoglio/wavClusteR 
).

To sync these changes with the bioC GitHub repository, I have followed the 
documentation at https://bioconductor.org/developers/how-to/git/ 

 . However, even though I added an upstream remote to my repository and added a 
public key as described, when I fetch updates from all (see 
https://bioconductor.org/developers/how-to/git/sync-existing-repositories/ 
)
 I get

| => git fetch --all
Fetching origin
Fetching upstream
g...@git.bioconductor.org 
: 
Permission denied (publickey).
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
error: Could not fetch upstream

Could you please help me with this issue?

Thanks a lot for your time and patience.

Best wishes,
Federico
[[alternative HTML version deleted]]

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recipient(s), you are hereby notified that any disclosure, copying, 
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this message in error, please notify the sender immediately by e-mail and 
delete this email message from your computer. Thank you.
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