Re: [Bioc-devel] Querying web resources slow in Windows

[Alberto Valdeolivas]

Hello Richard,

Many thanks for your email. I will include the argument that you mentioned.

However, I can also notice a big difference in the time of execution when
querying web resources in my unity tests and in the examples of my
functions (Not only in the vignette building). In windows, they take much
longer than in the other OS.

Best,
Alberto.

On Mon, Sep 30, 2019 at 9:29 PM Richard Virgen-Slane 
wrote:

> I had a similar issue in the past. It was during vignette builiding. I
> fixed it by adding the argument “result=FALSE” in the r code.
>
> On Mon, Sep 30, 2019 at 9:25 AM Alberto Valdeolivas <
> alvaldeoli...@gmail.com> wrote:
>
>> Dear Bioc-Team,
>>
>> I am submitting the following new package to Bioconductor:
>>
>> https://github.com/Bioconductor/Contributions/issues/1263
>>
>> R CMD check results in a TIMEOUT when running in Windows server, whereas
>> it
>> runs much faster in Linux and MAC:
>>
>>
>> http://bioconductor.org/spb_reports/OmnipathR_buildreport_20190930111332.html
>>
>> <
>> http://bioconductor.org/spb_reports/OmnipathR_buildreport_20190925041516.html
>> >I
>> am querying web resources following the template function suggested in the
>> Bioconductor "How to". However, it seems that my queries work much faster
>> in Unix and MAC than in Windows.
>>
>> Is this a common issue? Where are these different between OS coming from?
>> Any clue on how to improve the performance in Windows?
>>
>> Many thanks and best regards,
>> Alberto.
>>
>> [[alternative HTML version deleted]]
>>
>> ___
>> Bioc-devel@r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>

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Re: [Bioc-devel] Querying web resources slow in Windows

[Richard Virgen-Slane]

I had a similar issue in the past. It was during vignette builiding. I
fixed it by adding the argument “result=FALSE” in the r code.

On Mon, Sep 30, 2019 at 9:25 AM Alberto Valdeolivas 
wrote:

> Dear Bioc-Team,
>
> I am submitting the following new package to Bioconductor:
>
> https://github.com/Bioconductor/Contributions/issues/1263
>
> R CMD check results in a TIMEOUT when running in Windows server, whereas it
> runs much faster in Linux and MAC:
>
>
> http://bioconductor.org/spb_reports/OmnipathR_buildreport_20190930111332.html
>
> <
> http://bioconductor.org/spb_reports/OmnipathR_buildreport_20190925041516.html
> >I
> am querying web resources following the template function suggested in the
> Bioconductor "How to". However, it seems that my queries work much faster
> in Unix and MAC than in Windows.
>
> Is this a common issue? Where are these different between OS coming from?
> Any clue on how to improve the performance in Windows?
>
> Many thanks and best regards,
> Alberto.
>
> [[alternative HTML version deleted]]
>
> ___
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>

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[Bioc-devel] Querying web resources slow in Windows

[Alberto Valdeolivas]

Dear Bioc-Team,

I am submitting the following new package to Bioconductor:

https://github.com/Bioconductor/Contributions/issues/1263

R CMD check results in a TIMEOUT when running in Windows server, whereas it
runs much faster in Linux and MAC:

http://bioconductor.org/spb_reports/OmnipathR_buildreport_20190930111332.html

I
am querying web resources following the template function suggested in the
Bioconductor "How to". However, it seems that my queries work much faster
in Unix and MAC than in Windows.

Is this a common issue? Where are these different between OS coming from?
Any clue on how to improve the performance in Windows?

Many thanks and best regards,
Alberto.

[[alternative HTML version deleted]]

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