Re: [Bioc-devel] R version dependency
All versions of Bioconductor are closely associated to a version of R to ensure proper testing. We do not currently test packages outside the current release and devel versions of Bioconductor. The current Bioconductor release will always run on the current version of R. The current Bioconductor devel for half the year will run on the current version of R and the second half of the year R-devel to prep for the annual R release. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center On Tue, Apr 23, 2024 at 5:47 AM Richard Heery wrote: > So the version of R depended on determines the version of Bioconductor that > the BBS will use when testing the package? > > > > On Tue, 23 Apr 2024 at 04:41, Anatoly Sorokin wrote: > > > Hi, > > You can even set 3.5 if your code working with that version of R, but > > BiocManager won't load the latest Bioconductor version (3.19) unless you > > have R 4.4. > > > > Cheers, > > Anatoly > > > > On Tue, Apr 23, 2024 at 2:57 AM Richard Heery > > wrote: > > > >> Hi all, > >> > >> I'm wondering what we should now list as the R version in the Depends > >> section of the description file: the current version 4.3.3 or the > >> development version 4.4? > >> > >> Cheers, > >> > >> Richard > >> > >> [[alternative HTML version deleted]] > >> > >> ___ > >> Bioc-devel@r-project.org mailing list > >> https://stat.ethz.ch/mailman/listinfo/bioc-devel > >> > > > > [[alternative HTML version deleted]] > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] R version dependency
So the version of R depended on determines the version of Bioconductor that the BBS will use when testing the package? On Tue, 23 Apr 2024 at 04:41, Anatoly Sorokin wrote: > Hi, > You can even set 3.5 if your code working with that version of R, but > BiocManager won't load the latest Bioconductor version (3.19) unless you > have R 4.4. > > Cheers, > Anatoly > > On Tue, Apr 23, 2024 at 2:57 AM Richard Heery > wrote: > >> Hi all, >> >> I'm wondering what we should now list as the R version in the Depends >> section of the description file: the current version 4.3.3 or the >> development version 4.4? >> >> Cheers, >> >> Richard >> >> [[alternative HTML version deleted]] >> >> ___ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] R version dependency
Hi, You can even set 3.5 if your code working with that version of R, but BiocManager won't load the latest Bioconductor version (3.19) unless you have R 4.4. Cheers, Anatoly On Tue, Apr 23, 2024 at 2:57 AM Richard Heery wrote: > Hi all, > > I'm wondering what we should now list as the R version in the Depends > section of the description file: the current version 4.3.3 or the > development version 4.4? > > Cheers, > > Richard > > [[alternative HTML version deleted]] > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] R version dependency
If you're submitting a new package, you might be asked to set this to R (>= 4.4). At least it used to be that way but I'm not sure this is still enforced. Otherwise you don't need to do anything. Best, H. On 4/22/24 10:56, Richard Heery wrote: > Hi all, > > I'm wondering what we should now list as the R version in the Depends > section of the description file: the current version 4.3.3 or the > development version 4.4? > > Cheers, > > Richard > > [[alternative HTML version deleted]] > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel -- Hervé Pagès Bioconductor Core Team hpages.on.git...@gmail.com [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] R version dependency
Hi all, I'm wondering what we should now list as the R version in the Depends section of the description file: the current version 4.3.3 or the development version 4.4? Cheers, Richard [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
