Re: [Bioc-devel] Subsetting Multiple platform build/check report

2018-04-20 Thread Sean Davis 
This little post I wrote a while back might be of interest to folks who
want a computable version of the build report, filterable using R tools.

https://seandavi.github.io/post/2017/11/a-computable-bioconductor-build-report/

Sean


On Fri, Apr 20, 2018 at 5:34 AM Mike Smith  wrote:

> I do something similar and have a local 'dashboard' page populated with the
> build status shields pulled from the package landing pages e.g.
> http://bioconductor.org/shields/build/devel/bioc/biomaRt.svg Then I can
> glance at that to see if anything isn't green.
>
> Mike
>
> On 20 April 2018 at 10:06, Kasper Daniel Hansen <
> kasperdanielhan...@gmail.com> wrote:
>
> > Steffen, my hackish solution is to have links on my homepage to all the
> > build pages I am interested in (www.hansenlab.org/software).
> >
> > Best,
> > Kasper
> >
> > On Thu, Apr 19, 2018 at 3:33 PM, Martin Morgan <
> > martin.mor...@roswellpark.org> wrote:
> >
> > > It's not obvious or easy to test, and not meant cynically, but pull
> > > requests welcome
> > >
> > >   https://github.com/Bioconductor/BBS/blob/master/3.8/report.js
> > >
> > > and FWIW there is the single package version
> > >
> > >   https://bioconductor.org/checkResults/devel/bioc-LATEST/mzR
> > >
> > > Martin
> > >
> > > On 04/19/2018 08:53 AM, Neumann, Steffen wrote:
> > >
> > >> Hi,
> > >>
> > >> we currently can easily check for broken packages using:
> > >> http://bioconductor.org/checkResults/devel/bioc-LATEST/
> > >> index.html#show=timeout,error
> > >>
> > >> It would be great to also subset the packages:
> > >> http://bioconductor.org/checkResults/devel/bioc-LATEST/
> > >> index.html#package=mzR,MSnbase,xcms,CAMERA
> > >>
> > >> to easily show the status of packages I am interested in.
> > >>
> > >> Yours,
> > >> Steffen
> > >>
> > >>
> > >
> > > This email message may contain legally privileged
> and/or...{{dropped:2}}
> > >
> > >
> > > ___
> > > Bioc-devel@r-project.org mailing list
> > > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> > >
> >
> > [[alternative HTML version deleted]]
> >
> > ___
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> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >
>
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>
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>
-- 
-- 
Sean Davis, MD, PhD
Center for Cancer Research
National Cancer Institute
National Institutes of Health
Bethesda, MD 20892
https://seandavi.github.io/
https://twitter.com/seandavis12

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Re: [Bioc-devel] Subsetting Multiple platform build/check report

2018-04-20 Thread Mike Smith 
I do something similar and have a local 'dashboard' page populated with the
build status shields pulled from the package landing pages e.g.
http://bioconductor.org/shields/build/devel/bioc/biomaRt.svg Then I can
glance at that to see if anything isn't green.

Mike

On 20 April 2018 at 10:06, Kasper Daniel Hansen <
kasperdanielhan...@gmail.com> wrote:

> Steffen, my hackish solution is to have links on my homepage to all the
> build pages I am interested in (www.hansenlab.org/software).
>
> Best,
> Kasper
>
> On Thu, Apr 19, 2018 at 3:33 PM, Martin Morgan <
> martin.mor...@roswellpark.org> wrote:
>
> > It's not obvious or easy to test, and not meant cynically, but pull
> > requests welcome
> >
> >   https://github.com/Bioconductor/BBS/blob/master/3.8/report.js
> >
> > and FWIW there is the single package version
> >
> >   https://bioconductor.org/checkResults/devel/bioc-LATEST/mzR
> >
> > Martin
> >
> > On 04/19/2018 08:53 AM, Neumann, Steffen wrote:
> >
> >> Hi,
> >>
> >> we currently can easily check for broken packages using:
> >> http://bioconductor.org/checkResults/devel/bioc-LATEST/
> >> index.html#show=timeout,error
> >>
> >> It would be great to also subset the packages:
> >> http://bioconductor.org/checkResults/devel/bioc-LATEST/
> >> index.html#package=mzR,MSnbase,xcms,CAMERA
> >>
> >> to easily show the status of packages I am interested in.
> >>
> >> Yours,
> >> Steffen
> >>
> >>
> >
> > This email message may contain legally privileged and/or...{{dropped:2}}
> >
> >
> > ___
> > Bioc-devel@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >
>
> [[alternative HTML version deleted]]
>
> ___
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>

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Re: [Bioc-devel] Subsetting Multiple platform build/check report

2018-04-20 Thread Kasper Daniel Hansen 
Steffen, my hackish solution is to have links on my homepage to all the
build pages I am interested in (www.hansenlab.org/software).

Best,
Kasper

On Thu, Apr 19, 2018 at 3:33 PM, Martin Morgan <
martin.mor...@roswellpark.org> wrote:

> It's not obvious or easy to test, and not meant cynically, but pull
> requests welcome
>
>   https://github.com/Bioconductor/BBS/blob/master/3.8/report.js
>
> and FWIW there is the single package version
>
>   https://bioconductor.org/checkResults/devel/bioc-LATEST/mzR
>
> Martin
>
> On 04/19/2018 08:53 AM, Neumann, Steffen wrote:
>
>> Hi,
>>
>> we currently can easily check for broken packages using:
>> http://bioconductor.org/checkResults/devel/bioc-LATEST/
>> index.html#show=timeout,error
>>
>> It would be great to also subset the packages:
>> http://bioconductor.org/checkResults/devel/bioc-LATEST/
>> index.html#package=mzR,MSnbase,xcms,CAMERA
>>
>> to easily show the status of packages I am interested in.
>>
>> Yours,
>> Steffen
>>
>>
>
> This email message may contain legally privileged and/or...{{dropped:2}}
>
>
> ___
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>

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Re: [Bioc-devel] Subsetting Multiple platform build/check report

2018-04-19 Thread Martin Morgan 
It's not obvious or easy to test, and not meant cynically, but pull 
requests welcome


  https://github.com/Bioconductor/BBS/blob/master/3.8/report.js

and FWIW there is the single package version

  https://bioconductor.org/checkResults/devel/bioc-LATEST/mzR

Martin

On 04/19/2018 08:53 AM, Neumann, Steffen wrote:

Hi,

we currently can easily check for broken packages using:
http://bioconductor.org/checkResults/devel/bioc-LATEST/index.html#show=timeout,error

It would be great to also subset the packages:
http://bioconductor.org/checkResults/devel/bioc-LATEST/index.html#package=mzR,MSnbase,xcms,CAMERA

to easily show the status of packages I am interested in.

Yours,
Steffen




This email message may contain legally privileged and/or...{{dropped:2}}

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[Bioc-devel] Subsetting Multiple platform build/check report

2018-04-19 Thread Neumann, Steffen 
Hi,

we currently can easily check for broken packages using:
http://bioconductor.org/checkResults/devel/bioc-LATEST/index.html#show=timeout,error

It would be great to also subset the packages:
http://bioconductor.org/checkResults/devel/bioc-LATEST/index.html#package=mzR,MSnbase,xcms,CAMERA

to easily show the status of packages I am interested in.

Yours,
Steffen

-- 

IPB HalleAG Massenspektrometrie & Bioinformatik
Dr. Steffen Neumann  http://www.IPB-Halle.DE
Weinberg 3   http://msbi.bic-gh.de
06120 Halle  Tel. +49 (0) 345 5582 - 1470
  +49 (0) 345 5582 - 0
sneumann(at)IPB-Halle.DE Fax. +49 (0) 345 5582 - 1409

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