Re: [Bioc-devel] build reports for apple silicon

[Kasper Daniel Hansen]

Oh. That's confusing, but now I at least know what is going on.

On Wed, Jan 24, 2024 at 10:58 AM Kern, Lori 
wrote:

> They are linked off the check result main page:
> https://bioconductor.org/checkResults/
>
> Because we can not run them daily they are not in the main report.
>
>
> Lori Shepherd - Kern
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> --
> *From:* Bioc-devel  on behalf of Kasper
> Daniel Hansen 
> *Sent:* Wednesday, January 24, 2024 10:54 AM
> *To:* bioc-devel 
> *Subject:* [Bioc-devel] build reports for apple silicon
>
> We're clearly producing binary builds for Apple Silicon. Why do we not have
> a build report for this platform?
>
> Best,
> Kasper
>
> [[alternative HTML version deleted]]
>
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-- 
Best,
Kasper

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Re: [Bioc-devel] build reports for apple silicon

[Kern, Lori via Bioc-devel]

They are linked off the check result main page:
https://bioconductor.org/checkResults/

Because we can not run them daily they are not in the main report.



Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Bioc-devel  on behalf of Kasper Daniel 
Hansen 
Sent: Wednesday, January 24, 2024 10:54 AM
To: bioc-devel 
Subject: [Bioc-devel] build reports for apple silicon

We're clearly producing binary builds for Apple Silicon. Why do we not have
a build report for this platform?

Best,
Kasper

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Re: [Bioc-devel] build reports for apple silicon

[Martin Grigorov]

Hi,

https://bioconductor.org/checkResults/3.19/bioc-mac-arm64-LATEST/

Regards,
Martin

On Wed, Jan 24, 2024 at 5:55 PM Kasper Daniel Hansen <
kasperdanielhan...@gmail.com> wrote:

> We're clearly producing binary builds for Apple Silicon. Why do we not have
> a build report for this platform?
>
> Best,
> Kasper
>
> [[alternative HTML version deleted]]
>
> ___
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>

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[Bioc-devel] build reports for apple silicon

[Kasper Daniel Hansen]

We're clearly producing binary builds for Apple Silicon. Why do we not have
a build report for this platform?

Best,
Kasper

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[Bioc-devel] build reports

[Obenchain, Valerie]

We're having a few problems smoothing out the git-based builds. Unfortunately 
there will be no build report for either release or devel today ... we hope to 
have this back on track for tomorrow.

Thanks for your patience.

Valerie


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Re: [Bioc-devel] Build reports not updated

[Chen Hao]

Dear Herve,

Thanks very much, the latest version 1.4.8 is online now.

Best Regards,
Chen Hao

On 12 Jul 2016, at 2:39 AM, Hervé Pagès 
> wrote:

Hi Chen Hao,

The script that takes care of propagating the packages didn't run
properly. This should be fixed now and the new version of cytofkit
(1.4.8) will become available in the next hour or so.

Cheers,
H.

On 07/10/2016 06:33 PM, Chen Hao wrote:
Dear Bioconductor core team,

My latest commit of package cytofkit (version 1.4.8) to Bioconductor was
built successfully according to the report
http://bioconductor.org/checkResults/release/bioc-LATEST/cytofkit/.
However the web page still present the old version (1.4.7)
https://www.bioconductor.org/packages/release/bioc/html/cytofkit.html.

Could you help take a look? We have an urgent need to provide the latest
version (1.4.8) for a journal paper review.

Thanks very much.

Best Regards,
Chen Hao

On 8 Jul 2016, at 1:52 PM, Monther Alhamdoosh 

> wrote:

Hi Chen,

You may check now. My package was built last night.

Cheers,
Monther

On Fri, Jul 8, 2016 at 3:43 PM, Chen Hao

> wrote:

   Dear Monther,

   There seems no building yesterday. Do you have any good news for
   the next building?
   I have a package(cytofkit) with important updating need to
   replaced the old one.

   Best Regards,
   Chen Hao

On 7 Jul 2016, at 8:57 AM, Hervé Pagès 

   > wrote:

Hi Monther,

On 07/06/2016 05:05 PM, Monther Alhamdoosh wrote:
I just noticed that the latest snapshot of the build reports
   was based on
Sunday 3rd. Has been any change to the building cycle of
   software packages?

No changes to the build schedule. We're still trying to run the
   software
builds every day but have had many fatal build system failures
   in the
last 3 weeks or so. As a result, we've had many days without an
   updated
build report. The situation is particularly serious on Windows
(moscato1) where we haven't been able to complete a full build run
for at least 3 weeks. We're actively working on this.

Hopefully we'll have an updated build report tomorrow (Jul 7). If we
are lucky, it might even contain results for Windows. Fingers
   crossed...

H.


Cheers,
Monther

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Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpa...@fredhutch.org 

Phone:  (206) 667-5791
Fax:(206) 667-1319

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--
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpa...@fredhutch.org
Phone:  (206) 667-5791
Fax:(206) 667-1319


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Re: [Bioc-devel] Build reports not updated

[Monther Alhamdoosh]

Hi Chen,

You may check now. My package was built last night.

Cheers,
Monther

On Fri, Jul 8, 2016 at 3:43 PM, Chen Hao 
wrote:

> Dear Monther,
>
> There seems no building yesterday. Do you have any good news for the next
> building?
> I have a package(cytofkit) with important updating need to replaced the
> old one.
>
> Best Regards,
> Chen Hao
>
> > On 7 Jul 2016, at 8:57 AM, Hervé Pagès  wrote:
> >
> > Hi Monther,
> >
> > On 07/06/2016 05:05 PM, Monther Alhamdoosh wrote:
> >> I just noticed that the latest snapshot of the build reports was based
> on
> >> Sunday 3rd. Has been any change to the building cycle of software
> packages?
> >
> > No changes to the build schedule. We're still trying to run the software
> > builds every day but have had many fatal build system failures in the
> > last 3 weeks or so. As a result, we've had many days without an updated
> > build report. The situation is particularly serious on Windows
> > (moscato1) where we haven't been able to complete a full build run
> > for at least 3 weeks. We're actively working on this.
> >
> > Hopefully we'll have an updated build report tomorrow (Jul 7). If we
> > are lucky, it might even contain results for Windows. Fingers crossed...
> >
> > H.
> >
> >>
> >> Cheers,
> >> Monther
> >>
> >>  [[alternative HTML version deleted]]
> >>
> >> ___
> >> Bioc-devel@r-project.org mailing list
> >> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >>
> >
> > --
> > Hervé Pagès
> >
> > Program in Computational Biology
> > Division of Public Health Sciences
> > Fred Hutchinson Cancer Research Center
> > 1100 Fairview Ave. N, M1-B514
> > P.O. Box 19024
> > Seattle, WA 98109-1024
> >
> > E-mail: hpa...@fredhutch.org
> > Phone:  (206) 667-5791
> > Fax:(206) 667-1319
> >
> > ___
> > Bioc-devel@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
>

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Re: [Bioc-devel] Build reports not updated

[Hervé Pagès]

Hi Monther,

On 07/06/2016 05:05 PM, Monther Alhamdoosh wrote:

I just noticed that the latest snapshot of the build reports was based on
Sunday 3rd. Has been any change to the building cycle of software packages?


No changes to the build schedule. We're still trying to run the software
builds every day but have had many fatal build system failures in the
last 3 weeks or so. As a result, we've had many days without an updated
build report. The situation is particularly serious on Windows
(moscato1) where we haven't been able to complete a full build run
for at least 3 weeks. We're actively working on this.

Hopefully we'll have an updated build report tomorrow (Jul 7). If we
are lucky, it might even contain results for Windows. Fingers crossed...

H.



Cheers,
Monther

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--
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpa...@fredhutch.org
Phone:  (206) 667-5791
Fax:(206) 667-1319

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[Bioc-devel] Build reports not updated

[Monther Alhamdoosh]

I just noticed that the latest snapshot of the build reports was based on
Sunday 3rd. Has been any change to the building cycle of software packages?

Cheers,
Monther

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Re: [Bioc-devel] build reports are not updated

[Martin Morgan]

On 04/27/2016 05:30 AM, Andrzej Oleś wrote:

Dear Ludwig,

according to http://bioconductor.org/developers/release-schedule/ release
(BioC 3.2) builds were to stop on April 22. That's probably why they are
not updated anymore.


yes the _release_ builds have stopped. Devel builds still continue

  http://bioconductor.org/checkResults/devel/bioc-LATEST/EnrichmentBrowser/

(Windows should be appear again on the next report).

Martin



Cheers,
Andrzej

On Wed, Apr 27, 2016 at 11:08 AM, Ludwig Geistlinger <
ludwig.geistlin...@bio.ifi.lmu.de> wrote:


Dear Dan,

For some reason, the build reports are still showing the snapshot of
Saturday:

http://bioconductor.org/checkResults/release/bioc-LATEST/EnrichmentBrowser/

As there is an error, I would like to know whether this is something
persistent or only something temporary.

Thanks,
Ludwig

--
Dipl.-Bioinf. Ludwig Geistlinger

Lehr- und Forschungseinheit für Bioinformatik
Institut für Informatik
Ludwig-Maximilians-Universität München
Amalienstrasse 17, 2. Stock, Büro A201
80333 München

Tel.: 089-2180-4067
eMail: ludwig.geistlin...@bio.ifi.lmu.de

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Re: [Bioc-devel] build reports are not updated

[Andrzej Oleś]

Dear Ludwig,

according to http://bioconductor.org/developers/release-schedule/ release
(BioC 3.2) builds were to stop on April 22. That's probably why they are
not updated anymore.

Cheers,
Andrzej

On Wed, Apr 27, 2016 at 11:08 AM, Ludwig Geistlinger <
ludwig.geistlin...@bio.ifi.lmu.de> wrote:

> Dear Dan,
>
> For some reason, the build reports are still showing the snapshot of
> Saturday:
>
> http://bioconductor.org/checkResults/release/bioc-LATEST/EnrichmentBrowser/
>
> As there is an error, I would like to know whether this is something
> persistent or only something temporary.
>
> Thanks,
> Ludwig
>
> --
> Dipl.-Bioinf. Ludwig Geistlinger
>
> Lehr- und Forschungseinheit für Bioinformatik
> Institut für Informatik
> Ludwig-Maximilians-Universität München
> Amalienstrasse 17, 2. Stock, Büro A201
> 80333 München
>
> Tel.: 089-2180-4067
> eMail: ludwig.geistlin...@bio.ifi.lmu.de
>
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[Bioc-devel] build reports are not updated

[Ludwig Geistlinger]

Dear Dan,

For some reason, the build reports are still showing the snapshot of
Saturday:

http://bioconductor.org/checkResults/release/bioc-LATEST/EnrichmentBrowser/

As there is an error, I would like to know whether this is something
persistent or only something temporary.

Thanks,
Ludwig

-- 
Dipl.-Bioinf. Ludwig Geistlinger

Lehr- und Forschungseinheit für Bioinformatik
Institut für Informatik
Ludwig-Maximilians-Universität München
Amalienstrasse 17, 2. Stock, Büro A201
80333 München

Tel.: 089-2180-4067
eMail: ludwig.geistlin...@bio.ifi.lmu.de

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