Re: [Bioc-devel] error message - package GSAR
This is an issue that was reported 3 years ago
(http://thr3ads.net/r-devel/2013/04/2193760-Failed-to-locate-the-texi2pdf-output-file)
and has not been fixed, probably because it is extremely hard to reproduce. It
tends to happen on random packages from one day to the next. In fact, in
today's build report which is coming out in a few minutes, the problem does not
occur.
So you don't need to do anything.
Dan
- Original Message -
> From: "Rahmatallah, Yasir" <yrahmatal...@uams.edu>
> To: "bioc-devel" <bioc-devel@r-project.org>
> Sent: Thursday, May 5, 2016 12:28:35 PM
> Subject: [Bioc-devel] error message - package GSAR
> Hi,
>
> I'm the maintainer of package GSAR. Last Tuesday's build produced the
> following
> error message for the Windows platform only
>
> Warning: running command
> '"C:\Users\BIOCBU?1\AppData\Local\Programs\MIKTEX?1.9\miktex\bin\texify.exe"
> --quiet --pdf "GSAR.tex" --max-iterations=20 -I
> "E:/biocbld/bbs-3.3-bioc/R/share/texmf/tex/latex" -I
> "E:/biocbld/bbs-3.3-bioc/R/share/texmf/bibtex/bst"' had status 1
> Error in find_vignette_product(name, by = "texi2pdf", engine = engine) :
> Failed to locate the 'texi2pdf' output file (by engine 'utils::Sweave') for
> vignette with name 'GSAR'. The following files exist in directory '.':
> 'Bioconductor.sty', 'GSAR-KCMLplot.pdf', 'GSAR-mst.pdf', 'GSAR-mst2plot.pdf',
> 'GSAR.Rnw', 'GSAR.bib', 'GSAR.tex', 'unsrturl.bst'
> Calls: -> find_vignette_product
> Execution halted
>
> It seems that the PDF file of the vignette cannot be found. Since the package
> passes on Linux and Mac platforms, I assume the source of error is not in the
> vignette's .tex file itself. There is no line in the vignette's code that
> changes the working directory and all other files in the directory are being
> listed in the error message. Any idea what caused this error and how to fix
> it?
>
> Regards,
> Yasir
>
> --
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Re: [Bioc-devel] error message - package GSAR
Thank you Dan for clarification. I guess I had bad luck in the last build.
Yasir
-Original Message-
From: Dan Tenenbaum [mailto:dtene...@fredhutch.org]
Sent: Thursday, May 05, 2016 3:26 PM
To: Rahmatallah, Yasir
Cc: bioc-devel
Subject: Re: [Bioc-devel] error message - package GSAR
This is an issue that was reported 3 years ago
(http://thr3ads.net/r-devel/2013/04/2193760-Failed-to-locate-the-texi2pdf-output-file)
and has not been fixed, probably because it is extremely hard to reproduce. It
tends to happen on random packages from one day to the next. In fact, in
today's build report which is coming out in a few minutes, the problem does not
occur.
So you don't need to do anything.
Dan
- Original Message -
> From: "Rahmatallah, Yasir" <yrahmatal...@uams.edu>
> To: "bioc-devel" <bioc-devel@r-project.org>
> Sent: Thursday, May 5, 2016 12:28:35 PM
> Subject: [Bioc-devel] error message - package GSAR
> Hi,
>
> I'm the maintainer of package GSAR. Last Tuesday's build produced the
> following error message for the Windows platform only
>
> Warning: running command
> '"C:\Users\BIOCBU?1\AppData\Local\Programs\MIKTEX?1.9\miktex\bin\texify.exe"
> --quiet --pdf "GSAR.tex" --max-iterations=20 -I
> "E:/biocbld/bbs-3.3-bioc/R/share/texmf/tex/latex" -I
> "E:/biocbld/bbs-3.3-bioc/R/share/texmf/bibtex/bst"' had status 1 Error
> in find_vignette_product(name, by = "texi2pdf", engine = engine) :
> Failed to locate the 'texi2pdf' output file (by engine
> 'utils::Sweave') for vignette with name 'GSAR'. The following files exist in
> directory '.':
> 'Bioconductor.sty', 'GSAR-KCMLplot.pdf', 'GSAR-mst.pdf',
> 'GSAR-mst2plot.pdf', 'GSAR.Rnw', 'GSAR.bib', 'GSAR.tex', 'unsrturl.bst'
> Calls: -> find_vignette_product Execution halted
>
> It seems that the PDF file of the vignette cannot be found. Since the
> package passes on Linux and Mac platforms, I assume the source of
> error is not in the vignette's .tex file itself. There is no line in
> the vignette's code that changes the working directory and all other
> files in the directory are being listed in the error message. Any idea what
> caused this error and how to fix it?
>
> Regards,
> Yasir
>
> --
> Confidentiality Notice: This e-mail message, including
> a...{{dropped:10}}
>
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> Bioc-devel@r-project.org mailing list
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[Bioc-devel] error message - package GSAR
Hi,
I'm the maintainer of package GSAR. Last Tuesday's build produced the following
error message for the Windows platform only
Warning: running command
'"C:\Users\BIOCBU?1\AppData\Local\Programs\MIKTEX?1.9\miktex\bin\texify.exe"
--quiet --pdf "GSAR.tex" --max-iterations=20 -I
"E:/biocbld/bbs-3.3-bioc/R/share/texmf/tex/latex" -I
"E:/biocbld/bbs-3.3-bioc/R/share/texmf/bibtex/bst"' had status 1
Error in find_vignette_product(name, by = "texi2pdf", engine = engine) :
Failed to locate the 'texi2pdf' output file (by engine 'utils::Sweave') for
vignette with name 'GSAR'. The following files exist in directory '.':
'Bioconductor.sty', 'GSAR-KCMLplot.pdf', 'GSAR-mst.pdf', 'GSAR-mst2plot.pdf',
'GSAR.Rnw', 'GSAR.bib', 'GSAR.tex', 'unsrturl.bst'
Calls: -> find_vignette_product
Execution halted
It seems that the PDF file of the vignette cannot be found. Since the package
passes on Linux and Mac platforms, I assume the source of error is not in the
vignette's .tex file itself. There is no line in the vignette's code that
changes the working directory and all other files in the directory are being
listed in the error message. Any idea what caused this error and how to fix it?
Regards,
Yasir
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