Re: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it

2020-06-12 Thread Bhagwat, Aditya 
Owkies, thx!

Aditya

From: Shepherd, Lori 
Sent: Freitag, 12. Juni 2020 17:42
To: Bhagwat, Aditya ; bioc-devel@r-project.org
Subject: Re: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a 
branch 'RELEASE_3_11' cannot be created from it

If you git clone the git.bioconductor.org repository for your package in a 
different folder location you would be able to see the copy and commits we have 
on our server (I understand not very convenient)

There is a delay from commits to updates on the building reports and landing 
page.  It is discussed at the top of the page and has been answered numerous 
times on the mailing list

http://bioconductor.org/developers/how-to/troubleshoot-build-report/

We are in the process of potentially expanding the submission process tracker 
building on commit to the daily builder.  There is still no time period on when 
that would be available as it has just started being explored.

Cheers,


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Bhagwat, Aditya 
mailto:aditya.bhag...@mpi-bn.mpg.de>>
Sent: Friday, June 12, 2020 11:33 AM
To: Shepherd, Lori 
mailto:lori.sheph...@roswellpark.org>>; 
bioc-devel@r-project.org 
mailto:bioc-devel@r-project.org>>
Subject: RE: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a 
branch 'RELEASE_3_11' cannot be created from it


Thankyou Lori,



Is there a way to get a visual overview of recent commits at 
https://git.bioconductor.org/packages/multicrispr?
 (as in e.g. github)

Asking because I cannot see recent commits (pushed to upstream successfully 
yesterday) reflected in build 
reports
 or landing 
page.

A related question: the CI/CD feature during package submission (master branch 
push to github triggers build attempt on the BioC servers) was actually very 
useful, but I can understand that you don't provide this for accepted packages 
to keep the load on your servers manageable.

What CI/CD setup would you recommend (from the perspective of being maximally 
relevant for BioC).



Travis?



Thank you for helping!



Aditya





From: Shepherd, Lori [lori.sheph...@roswellpark.org]
Sent: Thursday, June 11, 2020 6:18 PM
To: Bhagwat, Aditya; bioc-devel@r-project.org
Subject: Re: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a 
branch 'RELEASE_3_11' cannot be created from it

Newly accepted packages are added into devel only.  They will be a release 
branch as soon as the next scheduled Bioconductor release occurs.



Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263



From: Bioc-devel 
mailto:bioc-devel-boun...@r-project.org>> on 
behalf of Bhagwat, Aditya 
mailto:aditya.bhag...@mpi-bn.mpg.de>>
Sent: Thursday, June 11, 2020 12:15 PM
To: bioc-devel@r-project.org 
mailto:bioc-devel@r-project.org>>
Subject: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a 
branch 'RELEASE_3_11' cannot be created from it



Dear Bioc Core,

Thank you for accepting multicrispr on

Re: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it

2020-06-12 Thread Shepherd, Lori 
If you git clone the git.bioconductor.org repository for your package in a 
different folder location you would be able to see the copy and commits we have 
on our server (I understand not very convenient)

There is a delay from commits to updates on the building reports and landing 
page.  It is discussed at the top of the page and has been answered numerous 
times on the mailing list

http://bioconductor.org/developers/how-to/troubleshoot-build-report/

We are in the process of potentially expanding the submission process tracker 
building on commit to the daily builder.  There is still no time period on when 
that would be available as it has just started being explored.

Cheers,


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Bhagwat, Aditya 
Sent: Friday, June 12, 2020 11:33 AM
To: Shepherd, Lori ; bioc-devel@r-project.org 

Subject: RE: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a 
branch 'RELEASE_3_11' cannot be created from it


Thankyou Lori,



Is there a way to get a visual overview of recent commits at 
https://git.bioconductor.org/packages/multicrispr?
 (as in e.g. github)

Asking because I cannot see recent commits (pushed to upstream successfully 
yesterday) reflected in build 
reports
 or landing 
page.

A related question: the CI/CD feature during package submission (master branch 
push to github triggers build attempt on the BioC servers) was actually very 
useful, but I can understand that you don�t provide this for accepted packages 
to keep the load on your servers manageable.

What CI/CD setup would you recommend (from the perspective of being maximally 
relevant for BioC).



Travis?



Thank you for helping!



Aditya





From: Shepherd, Lori [lori.sheph...@roswellpark.org]
Sent: Thursday, June 11, 2020 6:18 PM
To: Bhagwat, Aditya; bioc-devel@r-project.org
Subject: Re: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a 
branch 'RELEASE_3_11' cannot be created from it

Newly accepted packages are added into devel only.  They will be a release 
branch as soon as the next scheduled Bioconductor release occurs.



Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263



From: Bioc-devel  on behalf of Bhagwat, 
Aditya 
Sent: Thursday, June 11, 2020 12:15 PM
To: bioc-devel@r-project.org 
Subject: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a 
branch 'RELEASE_3_11' cannot be created from it



Dear Bioc Core,

Thank you for accepting multicrispr on 
BioC.
I was going through the instructions on how to sync existing

Re: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it

2020-06-12 Thread Bhagwat, Aditya 
Thankyou Lori,

Is there a way to get a visual overview of recent commits at 
https://git.bioconductor.org/packages/multicrispr? (as in e.g. github)
Asking because I cannot see recent commits (pushed to upstream successfully 
yesterday) reflected in build 
reports or landing 
page.
A related question: the CI/CD feature during package submission (master branch 
push to github triggers build attempt on the BioC servers) was actually very 
useful, but I can understand that you don't provide this for accepted packages 
to keep the load on your servers manageable.
What CI/CD setup would you recommend (from the perspective of being maximally 
relevant for BioC).

Travis?

Thank you for helping!

Aditya


From: Shepherd, Lori [lori.sheph...@roswellpark.org]
Sent: Thursday, June 11, 2020 6:18 PM
To: Bhagwat, Aditya; bioc-devel@r-project.org
Subject: Re: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a 
branch 'RELEASE_3_11' cannot be created from it
Newly accepted packages are added into devel only.  They will be a release 
branch as soon as the next scheduled Bioconductor release occurs.


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Bioc-devel  on behalf of Bhagwat, 
Aditya 
Sent: Thursday, June 11, 2020 12:15 PM
To: bioc-devel@r-project.org 
Subject: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a 
branch 'RELEASE_3_11' cannot be created from it

Dear Bioc Core,

Thank you for accepting multicrispr on 
BioC.
I was going through the instructions on how to sync existing 
repositories.
All instructions up to point 9 work.

Point 10, however fails, when creating the release branch:
$ git checkout -b RELEASE_3_11 upstream/RELEASE_3_11
fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' 
cannot be created  from it

I wonder what I am doing wrong (seems like it should be something trivial, but 
I am not seeing it).

Thank you for helping!

Aditya

[[alternative HTML version deleted]]

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Re: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it

2020-06-12 Thread Shepherd, Lori 
Yes what you described is correct and why the ERROR is occurring.  So at the 
next Bioconductor release (3.12) you will have a  RELEASE_3_12 branch that 
Bioconductor will created for Bioc 3.12 commits  and the master branch will 
continue to link to our devel branch.

Cheers,


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Bhagwat, Aditya 
Sent: Thursday, June 11, 2020 3:07 PM
To: Shepherd, Lori ; bioc-devel@r-project.org 

Subject: RE: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a 
branch 'RELEASE_3_11' cannot be created from it

Thankyou Lori, Nitesh,

So you are saying is that

  *   upstream/RELEASE_*_* is created from your end with the next BioC release.
  *   The git error message arises because upstream/RELEASE_3_11 does not exist 
to copy the contents of (locally created) RELEASE_3_11 into.

The points under 
http://bioconductor.org/developers/how-to/git/faq/
 #14 did work for me, but the above explanation makes sense.

Thanks!

Aditya



From: Shepherd, Lori [lori.sheph...@roswellpark.org]
Sent: Thursday, June 11, 2020 6:18 PM
To: Bhagwat, Aditya; bioc-devel@r-project.org
Subject: Re: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a 
branch 'RELEASE_3_11' cannot be created from it

Newly accepted packages are added into devel only.  They will be a release 
branch as soon as the next scheduled Bioconductor release occurs.


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Bioc-devel  on behalf of Bhagwat, 
Aditya 
Sent: Thursday, June 11, 2020 12:15 PM
To: bioc-devel@r-project.org 
Subject: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a 
branch 'RELEASE_3_11' cannot be created from it

Dear Bioc Core,

Thank you for accepting multicrispr on 
BioC.
I was going through the instructions on how to sync existing 
repositories.
All instructions up to point 9 work.

Point 10, however fails, when creating the release branch:
$ git checkout -b RELEASE_3_11 upstream/RELEASE_3_11
fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' 
cannot be created  from it

I wonder what I am doing wrong (seems like it should be something trivial, but 
I am not seeing it).

Thank you for helping!

Aditya

[[alternative HTML version deleted]]

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This email message may contain legally privileged and/or confidential 
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email message is prohibited. If you have received this message in error, please 
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Re: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it

2020-06-11 Thread Bhagwat, Aditya 
Thankyou Lori, Nitesh,

So you are saying is that

  *   upstream/RELEASE_*_* is created from your end with the next BioC release.
  *   The git error message arises because upstream/RELEASE_3_11 does not exist 
to copy the contents of (locally created) RELEASE_3_11 into.

The points under http://bioconductor.org/developers/how-to/git/faq/ #14 did 
work for me, but the above explanation makes sense.

Thanks!

Aditya



From: Shepherd, Lori [lori.sheph...@roswellpark.org]
Sent: Thursday, June 11, 2020 6:18 PM
To: Bhagwat, Aditya; bioc-devel@r-project.org
Subject: Re: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a 
branch 'RELEASE_3_11' cannot be created from it

Newly accepted packages are added into devel only.  They will be a release 
branch as soon as the next scheduled Bioconductor release occurs.


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Bioc-devel  on behalf of Bhagwat, 
Aditya 
Sent: Thursday, June 11, 2020 12:15 PM
To: bioc-devel@r-project.org 
Subject: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a 
branch 'RELEASE_3_11' cannot be created from it

Dear Bioc Core,

Thank you for accepting multicrispr on 
BioC.
I was going through the instructions on how to sync existing 
repositories.
All instructions up to point 9 work.

Point 10, however fails, when creating the release branch:
$ git checkout -b RELEASE_3_11 upstream/RELEASE_3_11
fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' 
cannot be created  from it

I wonder what I am doing wrong (seems like it should be something trivial, but 
I am not seeing it).

Thank you for helping!

Aditya

[[alternative HTML version deleted]]

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Re: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it

2020-06-11 Thread Shepherd, Lori 
Newly accepted packages are added into devel only.  They will be a release 
branch as soon as the next scheduled Bioconductor release occurs.


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Bioc-devel  on behalf of Bhagwat, 
Aditya 
Sent: Thursday, June 11, 2020 12:15 PM
To: bioc-devel@r-project.org 
Subject: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a 
branch 'RELEASE_3_11' cannot be created from it

Dear Bioc Core,

Thank you for accepting multicrispr on 
BioC.
I was going through the instructions on how to sync existing 
repositories.
All instructions up to point 9 work.

Point 10, however fails, when creating the release branch:
$ git checkout -b RELEASE_3_11 upstream/RELEASE_3_11
fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' 
cannot be created  from it

I wonder what I am doing wrong (seems like it should be something trivial, but 
I am not seeing it).

Thank you for helping!

Aditya

[[alternative HTML version deleted]]

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Re: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it

2020-06-11 Thread Nitesh Turaga 
Hi Aditya,

http://bioconductor.org/developers/how-to/git/faq/ 
 #14 would give me more 
information on how to help you with this issue.

Best,

Nitesh 

> On Jun 11, 2020, at 12:15 PM, Bhagwat, Aditya  
> wrote:
> 
> Dear Bioc Core,
> 
> Thank you for accepting multicrispr on 
> BioC.
> I was going through the instructions on how to sync existing 
> repositories.
> All instructions up to point 9 work.
> 
> Point 10, however fails, when creating the release branch:
> $ git checkout -b RELEASE_3_11 upstream/RELEASE_3_11
> fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' 
> cannot be created  from it
> 
> I wonder what I am doing wrong (seems like it should be something trivial, 
> but I am not seeing it).
> 
> Thank you for helping!
> 
> Aditya
> 
>   [[alternative HTML version deleted]]
> 
> ___
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[Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it

2020-06-11 Thread Bhagwat, Aditya 
Dear Bioc Core,

Thank you for accepting multicrispr on 
BioC.
I was going through the instructions on how to sync existing 
repositories.
All instructions up to point 9 work.

Point 10, however fails, when creating the release branch:
$ git checkout -b RELEASE_3_11 upstream/RELEASE_3_11
fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' 
cannot be created  from it

I wonder what I am doing wrong (seems like it should be something trivial, but 
I am not seeing it).

Thank you for helping!

Aditya

[[alternative HTML version deleted]]

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