Re: [Bioc-devel] Commits not appearing in bioconductor build

2018-11-06 Thread Shepherd, Lori 
And as Nitesh said additional pushes can take up to 48 hours to appear -

They also would need a valid version bump in order to be picked up by the 
builders.


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Bioc-devel  on behalf of Clare Pacini 

Sent: Tuesday, November 6, 2018 3:29:26 AM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Commits not appearing in bioconductor build

Hi all,

I have pushed some changes to a package DrugVsDisease but after 2 builds on 
bioconductor it is not showing any updates to the package. Any suggestions?

Thanks

Clare

dhcp-10-248-132-213:DrugVsDisease clare$ git commit -m "add import From"
[master c8faca2] add import From
 1 file changed, 2 insertions(+)
dhcp-10-248-132-213:DrugVsDisease clare$ git add DESCRIPTION
dhcp-10-248-132-213:DrugVsDisease clare$ git commit -m "bump version"
[master a2d6b1b] bump version
 1 file changed, 2 insertions(+), 2 deletions(-)
dhcp-10-248-132-213:DrugVsDisease clare$ git push upstream master
Counting objects: 12, done.
Delta compression using up to 8 threads.
Compressing objects: 100% (12/12), done.
Writing objects: 100% (12/12), 1.45 KiB | 1.45 MiB/s, done.
Total 12 (delta 6), reused 0 (delta 0)
To git.bioconductor.org:packages/DrugVsDisease.git
   86ac1a1..a2d6b1b  master -> master
dhcp-10-248-132-213:DrugVsDisease clare$ git push origin master
Counting objects: 6, done.
Delta compression using up to 8 threads.
Compressing objects: 100% (6/6), done.
Writing objects: 100% (6/6), 737 bytes | 737.00 KiB/s, done.
Total 6 (delta 3), reused 0 (delta 0)
remote: Resolving deltas: 100% (3/3), completed with 2 local objects.
To https://github.com/clarepacini/DrugVsDisease.git
   8ce514c..a2d6b1b  master -> master
dhcp-10-248-132-213:DrugVsDisease clare$ git push upstream master
Everything up-to-date


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Re: [Bioc-devel] Commits not appearing in bioconductor build

2018-11-06 Thread Shepherd, Lori 
The version we have in git and that is building on devel is 2.25.1 which was 
pushed on November 4th.   If you made any additional changes please make sure 
they are pushed to g...@git.bioconductor.org:packages/DrugVsDisease.git

There have been no pushes to the RELEASE_3_8 branch.


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Bioc-devel  on behalf of Clare Pacini 

Sent: Tuesday, November 6, 2018 3:29:26 AM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Commits not appearing in bioconductor build

Hi all,

I have pushed some changes to a package DrugVsDisease but after 2 builds on 
bioconductor it is not showing any updates to the package. Any suggestions?

Thanks

Clare

dhcp-10-248-132-213:DrugVsDisease clare$ git commit -m "add import From"
[master c8faca2] add import From
 1 file changed, 2 insertions(+)
dhcp-10-248-132-213:DrugVsDisease clare$ git add DESCRIPTION
dhcp-10-248-132-213:DrugVsDisease clare$ git commit -m "bump version"
[master a2d6b1b] bump version
 1 file changed, 2 insertions(+), 2 deletions(-)
dhcp-10-248-132-213:DrugVsDisease clare$ git push upstream master
Counting objects: 12, done.
Delta compression using up to 8 threads.
Compressing objects: 100% (12/12), done.
Writing objects: 100% (12/12), 1.45 KiB | 1.45 MiB/s, done.
Total 12 (delta 6), reused 0 (delta 0)
To git.bioconductor.org:packages/DrugVsDisease.git
   86ac1a1..a2d6b1b  master -> master
dhcp-10-248-132-213:DrugVsDisease clare$ git push origin master
Counting objects: 6, done.
Delta compression using up to 8 threads.
Compressing objects: 100% (6/6), done.
Writing objects: 100% (6/6), 737 bytes | 737.00 KiB/s, done.
Total 6 (delta 3), reused 0 (delta 0)
remote: Resolving deltas: 100% (3/3), completed with 2 local objects.
To https://github.com/clarepacini/DrugVsDisease.git
   8ce514c..a2d6b1b  master -> master
dhcp-10-248-132-213:DrugVsDisease clare$ git push upstream master
Everything up-to-date


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Re: [Bioc-devel] Commits not appearing in bioconductor build

2018-11-06 Thread Turaga, Nitesh 
After a push is made it can take up to 48 hours for it to appear on the build 
report and landing pages - i.e. we do one pull, build, check, propagate in 24 
hours - so if your commit was after the pull for the day it wont be until the 
following day.

http://bioconductor.org/checkResults/devel/bioc-LATEST/

http://bioconductor.org/checkResults/devel/bioc-LATEST/DrugVsDisease/malbec2-checksrc.html

Please check why the package is being timed out. Issue another version bump to 
make sure it's not an issue within the package.

Best,


Nitesh

Get Outlook for Android


From: Bioc-devel  on behalf of Clare Pacini 

Sent: Tuesday, November 6, 2018 3:29:26 AM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Commits not appearing in bioconductor build

Hi all,

I have pushed some changes to a package DrugVsDisease but after 2 builds on 
bioconductor it is not showing any updates to the package. Any suggestions?

Thanks

Clare

dhcp-10-248-132-213:DrugVsDisease clare$ git commit -m "add import From"
[master c8faca2] add import From
 1 file changed, 2 insertions(+)
dhcp-10-248-132-213:DrugVsDisease clare$ git add DESCRIPTION
dhcp-10-248-132-213:DrugVsDisease clare$ git commit -m "bump version"
[master a2d6b1b] bump version
 1 file changed, 2 insertions(+), 2 deletions(-)
dhcp-10-248-132-213:DrugVsDisease clare$ git push upstream master
Counting objects: 12, done.
Delta compression using up to 8 threads.
Compressing objects: 100% (12/12), done.
Writing objects: 100% (12/12), 1.45 KiB | 1.45 MiB/s, done.
Total 12 (delta 6), reused 0 (delta 0)
To git.bioconductor.org:packages/DrugVsDisease.git
   86ac1a1..a2d6b1b  master -> master
dhcp-10-248-132-213:DrugVsDisease clare$ git push origin master
Counting objects: 6, done.
Delta compression using up to 8 threads.
Compressing objects: 100% (6/6), done.
Writing objects: 100% (6/6), 737 bytes | 737.00 KiB/s, done.
Total 6 (delta 3), reused 0 (delta 0)
remote: Resolving deltas: 100% (3/3), completed with 2 local objects.
To https://github.com/clarepacini/DrugVsDisease.git
   8ce514c..a2d6b1b  master -> master
dhcp-10-248-132-213:DrugVsDisease clare$ git push upstream master
Everything up-to-date


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recipient(s), you are hereby notified that any disclosure, copying, 
distribution, or use of this email message is prohibited.  If you have received 
this message in error, please notify the sender immediately by e-mail and 
delete this email message from your computer. Thank you.
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