[Boost-mpi] Paid assistance for installing boost-mpi
I have installed boost on our cluster but am having difficulty installing boost-mpi. Getting tons of errors. Can't figure out if it is mpi library issue or python issue or something else. We have openmpi and Intelmpi on our cluster. But I am no mpi expert! I would be glad to pay someone $40 to help me troubleshoot via a webex. Thanks! ___ Boost-mpi mailing list [email protected] https://lists.boost.org/mailman/listinfo.cgi/boost-mpi
Re: [Boost-mpi] Paid assistance for installing boost-mpi
Thanks for the quick reply! The boost version is 1_64_0. In the
project-config.jam file I just added one line at the end:
using mpi ;
For mpi, we have these versions installed as modules:
openmpi/1.8/1.8.4_intel-2015.1.133
IntelMPI/5
And for Intel compiler we have this module:
composer_xe/2015.1.133
I loaded the openmpi and composer modules. But when I type which mpiicc I get:
/usr/bin/which: no mpiicc in
(/apps/software/intel/composer_xe_2015.1.133/bin/intel64:/apps/software/openmpi/1.8.4_intel-2015.1.133/bin:)
I then try and build using this command:
./b2 -j20 install --prefix==/home/user/build/boost_1_64_0/libs > error.txt
I get tons of errors like this:
In file included from ./boost/log/detail/config.hpp:33,
from libs/log/src/process_id.cpp:16:
/apps/software/intel/composer_xe_2015.1.133/compiler/include/limits.h:36:54:
error: missing binary operator before token "("
"g++" -ftemplate-depth-128 -O3 -finline-functions -Wno-inline -Wall
-pthread -fPIC -m64 -fno-strict-aliasing -ftemplate-depth-1024
-fvisibility=hidden -$
...failed gcc.compile.c++
bin.v2/libs/log/build/gcc-4.4.7/release/threading-multi/process_id.o...
gcc.compile.c++
bin.v2/libs/log/build/gcc-4.4.7/release/threading-multi/code_conversion.o
In file included from ./boost/log/detail/config.hpp:33,
from libs/log/src/code_conversion.cpp:16:
/apps/software/intel/composer_xe_2015.1.133/compiler/include/limits.h:36:54:
error: missing binary operator before token "("
In file included from ./boost/cstdint.hpp:60,
from ./boost/system/error_code.hpp:15,
from ./boost/log/exceptions.hpp:23,
from libs/log/src/code_conversion.cpp:22:
/apps/software/intel/composer_xe_2015.1.133/compiler/include/stdint.h:43:54:
error: missing binary operator before token "("
From: Alain Miniussi
To: Info ; Discussion of Boost.MPI development
Sent: Thursday, June 22, 2017 3:15 AM
Subject: Re: [Boost-mpi] Paid assistance for installing boost-mpi
Hi,
Could you provide the boost version, the project-config.jam file, the
result of "which mpiicc" command and the first error message ?
Thanks
Alain
On 22/06/2017 03:47, Info via Boost-mpi wrote:
> I have installed boost on our cluster but am having difficulty installing
> boost-mpi. Getting tons of errors. Can't figure out if it is mpi library
> issue or python issue or something else.
>
> We have openmpi and Intelmpi on our cluster. But I am no mpi expert! I would
> be glad to pay someone $40 to help me troubleshoot via a webex.
>
>
> Thanks!
> ___
> Boost-mpi mailing list
> [email protected]
> https://lists.boost.org/mailman/listinfo.cgi/boost-mpi
___
Boost-mpi mailing list
[email protected]
https://lists.boost.org/mailman/listinfo.cgi/boost-mpi
Re: [Boost-mpi] Paid assistance for installing boost-mpi
I made some progress. The problem was I was not specifying the intel compiler in the toolset so it was using gcc. Here's what I did: ./bootstrap.sh --with-toolset=intel-linux And then: ./b2 -j20 install --prefix=/apps/home/user/boost_1_64_0/libs But then I run into this bug: https://svn.boost.org/trac10/ticket/12723 So I will try older version as workaround. From: Alain Miniussi To: Info ; Discussion of Boost.MPI development Sent: Thursday, June 22, 2017 3:15 AM Subject: Re: [Boost-mpi] Paid assistance for installing boost-mpi Hi, Could you provide the boost version, the project-config.jam file, the result of "which mpiicc" command and the first error message ? Thanks Alain On 22/06/2017 03:47, Info via Boost-mpi wrote: > I have installed boost on our cluster but am having difficulty installing > boost-mpi. Getting tons of errors. Can't figure out if it is mpi library > issue or python issue or something else. > > We have openmpi and Intelmpi on our cluster. But I am no mpi expert! I would > be glad to pay someone $40 to help me troubleshoot via a webex. > > > Thanks! > ___ > Boost-mpi mailing list > [email protected] > https://lists.boost.org/mailman/listinfo.cgi/boost-mpi ___ Boost-mpi mailing list [email protected] https://lists.boost.org/mailman/listinfo.cgi/boost-mpi
Re: [Boost-mpi] Paid assistance for installing boost-mpi
LINK=1 -DBOOST_MPI_SOURCE=1 -DNDEBUG -I"."
-I"/app/software/openmpi/1.8.4_intel-2015.1.133/include" -c -o
"bin.v2/libs/mpi/build/intel-linux/release/threading-multi/communicator.o"
"libs/mpi/src/communicator.cpp"
...failed intel-linux.compile.c++
bin.v2/libs/mpi/build/intel-linux/release/threading-multi/communicator.o...
...skipped
libboost_mpi.so.1.63.0
for lack of
communicator.o...
...skipped
libboost_mpi.so.1.63.0 for
lack of
libboost_mpi.so.1.63.0...
...skipped libboost_mpi.so for
lack of
libboost_mpi.so.1.63.0...
intel-linux.compile.c++
bin.v2/libs/mpi/build/intel-linux/release/link-static/threading-multi/graph_communicator.o
In file included from ./boost/type_traits.hpp(93),
from ./boost/pending/property.hpp(13),
from ./boost/graph/graph_traits.hpp(27),
from ./boost/mpi/graph_communicator.hpp(29),
from libs/mpi/src/graph_communicator.cpp(9):
./boost/type_traits/is_complex.hpp(20): error: namespace "std" has no member
"complex"
template struct is_complex > : public
true_type{};
^
In file included from ./boost/type_traits.hpp(93),
from ./boost/pending/property.hpp(13),
from ./boost/graph/graph_traits.hpp(27),
from ./boost/mpi/graph_communicator.hpp(29),
from libs/mpi/src/graph_communicator.cpp(9):
./boost/type_traits/is_complex.hpp(20): error: expected a ">"
template struct is_complex > : public
true_type{};
^
compilation aborted for libs/mpi/src/graph_communicator.cpp (code 2)
"icpc" -c -xc++ -w1 -inline-level=2 -O3 -ip -pthread -m64
-DBOOST_ALL_NO_LIB=1 -DBOOST_MPI_SOURCE=1 -DNDEBUG -I"."
-I"/app/software/openmpi/1.8.4_intel-2015.1.133/include" -c -o
"bin.v2/libs/mpi/build/intel-linux/release/link-static/threading-multi/graph_communicator.o"
"libs/mpi/src/graph_communicator.cpp"
...failed intel-linux.compile.c++
bin.v2/libs/mpi/build/intel-linux/release/link-static/threading-multi/graph_communicator.o...
intel-linux.compile.c++
bin.v2/libs/mpi/build/intel-linux/release/link-static/threading-multi/communicator.o
In file included from ./boost/type_traits.hpp(93),
from ./boost/pending/property.hpp(13),
from ./boost/graph/graph_traits.hpp(27),
from ./boost/mpi/graph_communicator.hpp(29),
from libs/mpi/src/communicator.cpp(9):
./boost/type_traits/is_complex.hpp(20): error: namespace "std" has no member
"complex"
template struct is_complex > : public
true_type{};
^
In file included from ./boost/type_traits.hpp(93),
from ./boost/pending/property.hpp(13),
from ./boost/graph/graph_traits.hpp(27),
from ./boost/mpi/graph_communicator.hpp(29),
from libs/mpi/src/communicator.cpp(9):
./boost/type_traits/is_complex.hpp(20): error: expected a ">"
template struct is_complex > : public
true_type{};
^
compilation aborted for libs/mpi/src/communicator.cpp (code 2)
"icpc" -c -xc++ -w1 -inline-level=2 -O3 -ip -pthread -m64
-DBOOST_ALL_NO_LIB=1 -DBOOST_MPI_SOURCE=1 -DNDEBUG -I"."
-I"/app/software/openmpi/1.8.4_intel-2015.1.133/include" -c -o
"bin.v2/libs/mpi/build/intel-linux/release/link-static/threading-multi/communicator.o"
"libs/mpi/src/communicator.cpp"
...failed intel-linux.compile.c++
bin.v2/libs/mpi/build/intel-linux/release/link-static/threading-multi/communicator.o...
...skipped
libboost_mpi.a(clean)
for lack of
communicator.o...
...skipped
libboost_mpi.a
for lack of
communicator.o...
...skipped libboost_mpi.a for
lack of
libboost_mpi.a...
...failed updating 4 targets...
...skipped 6 targets...
From: Alain Miniussi
To: Info ; Discussion of Boost.MPI development
Sent: Friday, June 23, 2017 9:49 AM
Subject: Re: [Boost-mpi] Paid assistance for installing boost-mpi
The bug will probably be there in the next release too, so you should
stick to version 1.63.
On 23/06/2017 15:13, Info wrote:
> I made some progress. The problem was I was not specifying the intel compiler
> in the toolset so it was using gcc. Here's what I did:
>
> ./bootstrap.sh --with-toolset=intel-linux
>
> And then:
>
> ./b2 -j20 install --prefix=/apps/home/user/boost_1_64_0/libs
>
> But then I run into this bug:
>
> https://svn.boost.org/trac10/ticket/12723
>
> So I will try older version as workaround.
>
>
> ________________
> From: Alain Miniussi
> To: Info ; D
[Boost-mpi] Which bootstrap to use?
I am having difficulty installing boost-mpi. So I have tried installing older versions with different compilers. My confusion is that some installation instructions say to use: boost_root/tools/build/bootstrap.sh Others say to use just: boost_root/bootstrap.sh Is there a difference between them? If so, which should I use. ___ Boost-mpi mailing list [email protected] https://lists.boost.org/mailman/listinfo.cgi/boost-mpi
Re: [Boost-mpi] Paid assistance for installing boost-mpi
I have gotten a little further using gcc 4.4 instead of Intel compiler. The error now is below. gcc.link.dll bin.v2/libs/mpi/build/gcc-4.4.7/release/threading-multi/libboost_mpi.so.1.63.0 /usr/bin/ld: cannot find -lnuma collect2: ld returned 1 exit status libnuma is in /usr/lib64/ which is in the LD_lib path. So not sure why it is is saying it can not find it? ___ Boost-mpi mailing list [email protected] https://lists.boost.org/mailman/listinfo.cgi/boost-mpi
