bug#70064: Error when loading r-sf and other spatial packages (gdal related)

2024-06-05 Thread Javier Vaquero Martínez 

Yes, it can be closed.

Regards.

El 5/6/24 a las 18:54, Simon Tournier escribió:

[No suele recibir correo electrónico de zimon.touto...@gmail.com. Descubra por 
qué esto es importante en https://aka.ms/LearnAboutSenderIdentification ]

Hi,

On Thu, 04 Apr 2024 at 18:04, Javier Vaquero Martínez  wrote:


So I managed to solve this. It turns out that some environment variables
where making this error to happen. Running in an isolated environment
with `guix shell -C r r-sf -- r` solves the problem.

Thanks for letting us know.  Therefore, can we close?

Cheers,
simon

bug#70668: Error running guix-build

2024-05-01 Thread Javier Vaquero Martínez 
I tried again today and I got this error, I hope this is the “COMPLETE 
output”.


|indexando objetos 82% 
▕█▍ 
▏^ Verificando canal 'guix', revisiones de 9edb3f6 a 7d4ae2f (57 nuevas 
revisiones)... Construyendo a partir de este canal: guix 
https://git.savannah.gnu.org/git/guix.git 7d4ae2f substitute: updating 
substitutes from 'https://ci.guix.gnu.org'... 100.0% substitute: 
updating substitutes from 'https://bordeaux.guix.gnu.org'... 100.0% 
construyendo 
/gnu/store/qbdh7y6398198q695wbb39fvaq1jg4yk-compute-guix-derivation.drv... 
substitute: updating substitutes from 'https://ci.guix.gnu.org'... 
100.0% substitute: updating substitutes from 
'https://ci.guix.gnu.org'... 100.0% guile-gnutls-4.0.0 123KiB 16.6MiB/s 
00:00 ▕██▏ 100.0% guile-lzma-0.1.1 52KiB 75.5MiB/s 00:00 
▕██▏ 100.0% guix-daemon-1.4.0-18.4c94b9e 262KiB 3.3MiB/s 
00:00 ▕██▏ 100.0% libdaemon-0.14 31KiB 192KiB/s 00:00 
▕██▏ 100.0% libevent-2.1.12 304KiB 127KiB/s 00:02 
▕██▏ 100.0% libgit2-1.7.2 667KiB 2.1MiB/s 00:00 
▕██▏ 100.0% avahi-0.8 348KiB 1.7MiB/s 00:00 
▕██▏ 100.0% guile-git-0.6.0 558KiB 1.14GiB/s 00:00 
▕██▏ 100.0% guile-avahi-0.4.1 61KiB 113.6MiB/s 00:00 
▕██▏ 100.0% libssh-0.10.6 248KiB 362.2MiB/s 00:00 
▕██▏ 100.0% nspr-4.35 255KiB 364.5MiB/s 00:00 
▕██▏ 100.0% guile-ssh-0.16.4 253KiB 359.2MiB/s 00:00 
▕██▏ 100.0% nss-3.99.0 2.5MiB 1.90GiB/s 00:00 
▕██▏ 100.0% guile-ssh-0.16.4-debug 261KiB 548.7MiB/s 
00:00 ▕██▏ 100.0% nss-3.99.0-bin 6.3MiB 1.3MiB/s 00:05 
▕██▏ 100.0% substitute: updating substitutes from 
'https://ci.guix.gnu.org'... 100.0% perl-text-wrapi18n-0.06 5KiB 
6.7MiB/s 00:00 ▕██▏ 100.0% perl-gettext-1.07 9KiB 
20.3MiB/s 00:00 ▕██▏ 100.0% perl-pod-parser-1.65 75KiB 
161.1MiB/s 00:00 ▕██▏ 100.0% perl-sgmls-1.1 30KiB 
47.2MiB/s 00:00 ▕██▏ 100.0% perl-syntax-keyword-try-0.28 
30KiB 65.8MiB/s 00:00 ▕██▏ 100.0% perl-term-readkey-2.38 
18KiB 41.2MiB/s 00:00 ▕██▏ 100.0% 
perl-unicode-linebreak-2019.001 102KiB 210.7MiB/s 00:00 
▕██▏ 100.0% perl-xs-parse-keyword-0.06 32KiB 68.6MiB/s 
00:00 ▕██▏ 100.0% perl-yaml-tiny-1.73 26KiB 58.2MiB/s 
00:00 ▕██▏ 100.0% po4a-0.69 2.0MiB 1.42GiB/s 00:00 
▕█▉ ▏ 77.3% po4a-0.69 2.0MiB 1.6MiB/s 00:01 
▕██▏ 100.0% substitute: updating substitutes from 
'https://ci.guix.gnu.org'... 100.0% substitute: updating substitutes 
from 'https://bordeaux.guix.gnu.org'... 100.0% The following derivations 
will be built: /gnu/store/3brbjcixl2301svf1nbrii7g2l5simsg-profile.drv 
/gnu/store/adgwjzmzn4vrrasg2wkkwc4015v9sn0q-guix-7d4ae2fca.drv 
/gnu/store/45zdnymwblyy96xjxx8vn66pp3g6kzpy-guix-manual.drv 
/gnu/store/fac7lbvv3vvckrbg89j33fi68mjkdrm4-guix-daemon.drv 
/gnu/store/mgr95jy5c0836wh2bn5k7ky2x54dqp2c-guix-command.drv 
/gnu/store/6pn8bgj7bnd0abbmdj2nw6nbdzxli2va-guix-module-union.drv 
/gnu/store/pslvbxg7li63hg756ld48428dv57b6s2-guix-7d4ae2fca-modules.drv 
/gnu/store/65q571jybj3b4swrip3xa6yp8cj5pfmz-guix-system-modules.drv 
/gnu/store/07ydxwmfwnyimjb975758fsbhxqz705g-guix-system.drv 
/gnu/store/186hzha1ryzmmm44w14qwylg3j3dlssj-guix-core-source.drv 
/gnu/store/2f0z0x4nqpwgwmrk5qs7ka0p3y2a2gny-config.scm.drv 
/gnu/store/7aipivqdfc1vjkl57iqrqijrnm84q6za-guix-packages.drv 
/gnu/store/yppyh6vkkyyb5rw1nf6chldy0ghyhrvx-guix-extra.drv 
/gnu/store/zd6p7ji2givw0riyfbz0cgz5k58gvhzi-guix-packages-base.drv 
/gnu/store/794jap8cxm794zrrsm57wlviar2ii4ng-guix-home-modules.drv 
/gnu/store/x4842h2wmh0s80nr7aj600as1rm0yxip-guix-home.drv 
/gnu/store/99sv8804ryjr3kvc0ci9xfj93x5xr3p3-guix-core-modules.drv 
/gnu/store/a4z23ss5ss68c53kl234w3jpi39m5gxc-guix-cli-core-modules.drv 
/gnu/store/ga4phpgik33kz2kz9mbz409k2g8ydk0y-guix-cli-core.drv 
/gnu/store/cb35ipxwi8sy4syn5hlkb9ka96g911ly-guix-extra-modules.drv 
/gnu/store/ihf8c969ljm3vpk288kgs0a8fqr38kn8-guix-system-tests-modules.drv 
/gnu/store/ygj7jyqfd8q6kn9rhcvyw14vc0lhy6qr-guix-system-tests.drv 
/gnu/store/mqjsk1r86jss0pb7zl3a50asp6p7hnls-guix-cli.drv 
/gnu/store/inws8xpm6xdridl5wpbwyr9caa2m80gr-guix-cli-modules.drv 
/gnu/store/la9sqimciqxyy8na371cpkx74dggy4ch-guix-packages-modules.drv 
/gnu/store/vv5gsmwsg53bwfa36vykg3bshrwafpfc-guix-config-modules.drv 
/gnu/store/i9dsxx8w7r9zbz39gkz97ga2g0yskhj2-guix-config.drv 
/gnu/store/k9x10rcsfk08dkw1n1l88sr2zqwdq7gh-guix-config-source.drv 
/gnu/store/4m3w64f68p6kg0jr7y6xqzfzggf7lgmq-config.scm.drv 
/gnu/store/wpplnihcpn9fx6a3npv38zzy42vgb449-guix-packages-base-modules.drv 
/gnu/store/j4rnf4vsgazc0wh55z9lzkqif2qxjnij-guix-misc.drv 
/gnu/store/4yh9936v1qmpn0hr6ahi3rklr005li4l-profile.drv

bug#70668: Error running guix-build

2024-04-30 Thread Javier Vaquero Martínez 
On a CentOS 8 server, I had previous trouble with selinux (not sure if 
this has to do with it). After running now `guix pull`, I found this error:



```

guix pull: error: You found a bug: the program 
'/gnu/store/pdy4cif4zsdyf27d59iqxynf79x43aap-compute-guix-derivation'
failed to compute the derivation for Guix (version: 
"3bd8d238aba718bf949691d0e37fa310e2cfc12a"; system: "x86_64-linux";

host version: "a8353e9d6b34fd8d42d2e8f14ce844849fe9c293"; pull-version: 1).
Please report the COMPLETE output above by email to .

```

bug#70064: Error when loading r-sf and other spatial packages (gdal related)

2024-04-04 Thread Javier Vaquero Martínez 
So I managed to solve this. It turns out that some environment variables 
where making this error to happen. Running in an isolated environment 
with `guix shell -C r r-sf -- r` solves the problem.



Regards

bug#70064: Error when loading r-sf and other spatial packages (gdal related)

2024-03-30 Thread Javier Vaquero Martínez 

Dear guix community,

I am quite new to Guix so I apologize if I am doing something wrong.

I added channel guix-cran to get R packages. I installed r-sf r-terra, 
and other packages. However, I cannot load them in R.


Here, at the end of the message I show and example with r-rgdal but same 
thing happens with r-sf or r-terra.


Am I doing something wrong? Can you reproduce the bug?

Regards,

Javier.

|$ guix shell r r-rgdal -- R -e "library(rgdal)" R version 4.3.3 
(2024-02-29) -- "Angel Food Cake" Copyright (C) 2024 The R Foundation 
for Statistical Computing Platform: x86_64-unknown-linux-gnu (64-bit) R 
es un software libre y viene sin GARANTIA ALGUNA. Usted puede 
redistribuirlo bajo ciertas circunstancias. Escriba 'license()' o 
'licence()' para detalles de distribucion. R es un proyecto colaborativo 
con muchos contribuyentes. Escriba 'contributors()' para obtener más 
información y 'citation()' para saber cómo citar R o paquetes de R en 
publicaciones. Escriba 'demo()' para demostraciones, 'help()' para el 
sistema on-line de ayuda, o 'help.start()' para abrir el sistema de 
ayuda HTML con su navegador. Escriba 'q()' para salir de R. > 
library(rgdal) Loading required package: sp Error: package or namespace 
load failed for ‘rgdal’ in dyn.load(file, DLLpath = DLLpath, ...): 
unable to load shared object 
'/gnu/store/xjs26gdxwj2149rzxmq1rfikbly2i1yr-r-rgdal-1.6-7/site-library/rgdal/libs/rgdal.so': 
/gnu/store/71kgqypidg2ksvwm84ccqjwyzai9ay1i-gdal-3.6.1/lib/libgdal.so.32: 
undefined symbol: GEOSConcaveHull_r |


​