Thanks Charles - that seems to work..!
Tony.
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Dr Antony W Oliver
Senior Research Fellow
CR-UK DNA Repair Enzymes Group
Genome Damage and Stability Centre
Science Park Road
University of Sussex
Falmer, Brighton, BN1 9RQ
email: antony.oli...@sussex.ac.uk
tel (office): +44 (0)1273 678349
tel (lab): +44 (0)1273 677512
On Nov 26, 2012, at 10:19 AM, Charles Ballard wrote:
You could give
/Applications/coot.app/Contents/Resources/script
a go.
Charles
On 23 Nov 2012, at 12:20, Antony Oliver wrote:
Forgive what may be a very simple question…
I have recently installed coot using the very nice CCP4 .dmg (0.7.0-i386) -
which now puts coot into /Applications
I now need to set a $PATH to coot, such that various scripts now 'know'
where it is (i.e. Phenix and BUSTER - sorry CCP4-ers).
Here I have hit a hurdle. Which binary file do I need to point a path
variable to?
From terminal I can use the command ' open -a coot ' - everything works fine
and dandy.
However, I cannot use ' /Applications/coot.app/Contents/MacOS/coot '
reliably - sometimes it works, but most of the time it crashes with the
following errors...
Nov 23 12:17:02 coot-real[80005] Error: kCGErrorIllegalArgument:
CGSGetSurfaceBounds
Nov 23 12:17:02 coot-real[80005] Error: kCGErrorFailure: Set a breakpoint
@ CGErrorBreakpoint() to catch errors as they are logged.
Nov 23 12:17:02 coot-real[80005] Error: kCGErrorIllegalArgument:
CGSBindSurface: Invalid window 0x8da
Nov 23 12:17:02 coot-real[80005] Error: kCGErrorIllegalArgument:
CGSBindSurface: Invalid window 0x8da
Nov 23 12:17:02 coot-real[80005] Error: kCGErrorIllegalArgument:
CGSBindSurface: Invalid window 0x8da
Am I making a school-boy error here?
With many thanks,
Tony.
---
Dr Antony W Oliver
Senior Research Fellow
CR-UK DNA Repair Enzymes Group
Genome Damage and Stability Centre
Science Park Road
University of Sussex
Falmer, Brighton, BN1 9RQ
email: antony.oli...@sussex.ac.uk
tel (office): +44 (0)1273 678349
tel (lab): +44 (0)1273 677512
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