[ccp4bb] Fw: AsCA 2018 / CRYSTAL 32: Early bird Closing

[Christopher Squire]

??

[https://az659834.vo.msecnd.net/eventsairseasiaprod/production-uoaevents-public/d231daa0bdac4db99817bc87d65a4b98]



Dear Colleagues,


Early bird closing 2 October 2018


A friendly reminder that early bird rates to attend the AsCA 2018/CRYSTAL 32 
conference will finish on 2 October 2018. Register today using 
(http://asca2018.org/registration/) to secure the discounted rate.

The conference will run from 2-5 December 2018. Keep up-to-date with our 
conference programme, outstanding lineup of 
workshops, and 
speakers. Don't forget to get in early and book 
your accommodation too!

We look forward to meeting you in Auckland.

Kind regards,
Dr. Christopher Squire (University of Auckland), Professor Ted Baker 
(University of Auckland), Professor Kurt Krause (University of Otago) and the 
AsCA 2018/CRYSTAL 32 Committee
http://asca2018.org/


[https://az659834.vo.msecnd.net/eventsairseasiaprod/production-uoaevents-public/349df4c40b164b00a1dd92f6922e2c14]











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[ccp4bb] Post request - EMBL

[Carolina Cuadras]

Dear CCP4bb, 

The Course and Conference Office of the European Molecular Biology Laboratory 
is organising a workshop called "EMBL Industry Workshop: Cryo-EM in Industry 
and Academia.” The scientific organisers asked me to contact you asking for 
your help to post this event. You can find the details below.

Title: EMBL Industry Workshop: Cryo-EM in Industry and Academia

Location & Dates: EMBL Heidelberg, Germany | 6 - 8 Feb 2019

Website: https://www.embl.de/training/events/2019/CPP19-01/ 


Conference Overview: 
Recent technical developments in cryo-electron microscopy (cryo-EM) and 
cryo-tomography now allow structures of challenging targets relevant for the 
pharmaceutical industry (membrane proteins, multi-subunit complexes, chromatin 
complexes etc.) to be determined at unprecedented resolution. This workshop is 
aimed at members of the pharmaceutical and allied industrial sectors that use 
(or are considering using) cryo-EM in drug discovery and agricultural research, 
academic researchers interested in the impact of state-of-the-art cryo-EM in 
drug discovery, and cryo-EM support staff that want to learn more about the 
specific needs of industry.
Structural biologists from leading pharmaceutical companies and academia have 
joined forces to co-organise a science-driven meeting to exchange trends, 
ideas, use-cases, opportunities and challenges related to the use of cryo-EM in 
industry and academia.

Thank you in advance for your support. If you have any questions, do not 
hesitate to contact me.


Best wishes,
Carolina


Carolina Cuadras
Course and Conference Office
European Molecular Biology Laboratory
Meyerhofstrasse 1
69117 Heidelberg
Germany

Phone: +49 (0) 6221 387 8106
Fax: +49 (0) 6221 387 8158

Please visit www.embl.org/events for a complete list of all EMBL events.
Please subscribe at www.embl.de/events/newsletter for our newsletter.








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Re: [ccp4bb] Building libccp4 static.

[Ian Tickle]

Hi Tim

No that doesn't work because then it's looking for /home/ian
/CCP4-7.0/ccp4-7.0-src/ccp4-7.0-src/lib/pkgconfig/*.pc but that directory
path doesn't exist.

Thanks for the suggestion!

Cheers

-- Ian


On Mon, 24 Sep 2018 at 13:55, Tim Gruene  wrote:

> Dear Ian,
>
> is it possible that the element list in the for loop,
> 'ccp4-7.0/lib/pkgconfig/*.pc' is empty?
> The error message contains ccp4-7.0-src as directory name, i.e. maybe it
> helps to write
>
>  for p in ccp4-7.0-src/lib/pkgconfig/*.pc
>
> Best wishes,
> Tim
>
> On 09/24/2018 12:47 PM, Ian Tickle wrote:
> >
> > All, I'm trying to build libccp4 statically (after all updates applied)
> > on Ubuntu 18.04.1 and I get this error:
> >
> > 2: /home/ian/CCP4-7.0/ccp4-7.0-src/chec: not
> > foundls/triggers/pkgconf-pathfix-nt.trigger: Fixing .pc Files (correct
> > path structure)
> >
> /home/ian/CCP4-7.0/ccp4-7.0-src/checkout/devtools/triggers/pkgconf-pathfix-nt.trigger:
> > 5: /home/ian/CCP4-7.0/ccp4-7.0-src/chec: not
> > foundls/triggers/pkgconf-pathfix-nt.trigger:
> >
> /home/ian/CCP4-7.0/ccp4-7.0-src/checkout/devtools/triggers/pkgconf-pathfix-nt.trigger:
>  7:
> >
> /home/ian/CCP4-7.0/ccp4-7.0-src/checkout/devtools/triggers/pkgconf-pathfix-nt.trigger:
> > Syntax error: word unexpected (expecting "do")
> > E: /bin/sh
> >
> /home/ian/CCP4-7.0/ccp4-7.0-src/checkout/devtools/triggers/pkgconf-pathfix-nt.trigger
> > returned with an error code (2)
> > *** success *** [3/3]
> >
> > The
> >
> file 
> /home/ian/CCP4-7.0/ccp4-7.0-src/checkout/devtools/triggers/pkgconf-pathfix-nt.trigger
> > contains:
> >
> > # REMatch: \/ccp4-7\.0\/lib\/pkgconfig\/.*\.pc
> >
> > VERBOSE=1
> > echo 'Fixing .pc Files (correct path structure)'
> >
> > for p in ccp4-7.0/lib/pkgconfig/*.pc
> > do
> >  echo 'Checking '$p' for errors'
> >  sed -i 's/=\/msys64/=\/c\/msys64/g' $p
> >  sed -i 's/="\/msys64/="\/c\/msys64/g' $p
> >  sed -i 's/-L\/msys64/-L\/c\/msys64/g' $p
> >  sed -i 's/-I\/msys64/-I\/c\/msys64/g' $p
> > done
> >
> > Presumably there's a syntax error there somewhere.  I can't see it but
> > then I'm not a Bourne shell expert.
> >
> > Any ideas?
> >
> > Thanks!
> >
> > -- Ian
> >
> >
> > 
> >
> > To unsubscribe from the CCP4BB list, click the following link:
> > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB=1
> >
>
> --
> --
> Paul Scherrer Institut
> Tim Gruene
> - persoenlich -
> OSUA/204
> Forschungsstrasse 111
> CH-5232 Villigen PSI
> phone: +41 (0)56 310 5297
>
> GPG Key ID = A46BEE1A
>
>



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[ccp4bb] Postdoc position available at Florida State University

[adarsh kumar]

Dear all

One postdoctoral position is available immediately in an enzymology
laboratory to elucidate mechanisms of DNA/RNA synthesis, DNA lesion bypass,
and base excision repair catalyzed by various human and viral DNA/RNA
polymerases, and to mechanistically investigate gene editing enzymes
including CRISPR/Cas9 and Cas13a. Background in structural biology (X-ray
crystallography and/or CryoEM), biophysics, protein purification, and
recombinant DNA techniques is preferred. An important criterion for
selection will be the ability of the desired individual to pursue
independent research in an active multi-disciplinary setting. Interested
candidates should send a CV and a statement describing experience, goals,
and reasons for the interest in this position, and arrange to have three
letters of recommendation sent to: Dr. Zucai Suo, Eminent Professor and
Dorian and John Blackmon Chair of Biomedical Science, Department of
Biomedical Sciences, College of Medicine, Florida State University,
Tallahassee, FL. Dr. Suo can be contacted by email (zucai@med.fsu.edu).
Further information about the research projects in the Suo Lab can be
obtained from https://u.osu.edu/suolab/.

Employer: Florida State University College of Medicine
Location: Tallahassee, Florida
Salary: NIH guidelines for post-doctoral salaries + benefits
Discipline: Life Sciences, Biochemistry, Biology, Biophysics, Structural
Biology, and Biomedical Sciences
Position Type: Full Time
Organization Type: Academia
Job Type: Postdoc


*Regards*



*Adarsh Kumar, PhD*

*Suo Lab*

*Florida State University School of Medicine*


*Tallahassee, FL - 32304*



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Re: [ccp4bb] Building libccp4 static.

[Tim Gruene]

Dear Ian,

is it possible that the element list in the for loop,
'ccp4-7.0/lib/pkgconfig/*.pc' is empty?
The error message contains ccp4-7.0-src as directory name, i.e. maybe it
helps to write

 for p in ccp4-7.0-src/lib/pkgconfig/*.pc

Best wishes,
Tim

On 09/24/2018 12:47 PM, Ian Tickle wrote:
> 
> All, I'm trying to build libccp4 statically (after all updates applied)
> on Ubuntu 18.04.1 and I get this error:
> 
> 2: /home/ian/CCP4-7.0/ccp4-7.0-src/chec: not
> foundls/triggers/pkgconf-pathfix-nt.trigger: Fixing .pc Files (correct
> path structure)
> /home/ian/CCP4-7.0/ccp4-7.0-src/checkout/devtools/triggers/pkgconf-pathfix-nt.trigger:
> 5: /home/ian/CCP4-7.0/ccp4-7.0-src/chec: not
> foundls/triggers/pkgconf-pathfix-nt.trigger:  
> /home/ian/CCP4-7.0/ccp4-7.0-src/checkout/devtools/triggers/pkgconf-pathfix-nt.trigger:
>  7:
> /home/ian/CCP4-7.0/ccp4-7.0-src/checkout/devtools/triggers/pkgconf-pathfix-nt.trigger:
> Syntax error: word unexpected (expecting "do") 
> E: /bin/sh
> /home/ian/CCP4-7.0/ccp4-7.0-src/checkout/devtools/triggers/pkgconf-pathfix-nt.trigger
> returned with an error code (2)
> *** success *** [3/3]
> 
> The
> file 
> /home/ian/CCP4-7.0/ccp4-7.0-src/checkout/devtools/triggers/pkgconf-pathfix-nt.trigger
> contains:
> 
> # REMatch: \/ccp4-7\.0\/lib\/pkgconfig\/.*\.pc
> 
> VERBOSE=1
> echo 'Fixing .pc Files (correct path structure)'
> 
> for p in ccp4-7.0/lib/pkgconfig/*.pc
> do
>  echo 'Checking '$p' for errors'
>  sed -i 's/=\/msys64/=\/c\/msys64/g' $p
>  sed -i 's/="\/msys64/="\/c\/msys64/g' $p
>  sed -i 's/-L\/msys64/-L\/c\/msys64/g' $p
>  sed -i 's/-I\/msys64/-I\/c\/msys64/g' $p
> done
> 
> Presumably there's a syntax error there somewhere.  I can't see it but
> then I'm not a Bourne shell expert.
> 
> Any ideas?
> 
> Thanks!
> 
> -- Ian
> 
> 
> 
> 
> To unsubscribe from the CCP4BB list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB=1
> 

-- 
--
Paul Scherrer Institut
Tim Gruene
- persoenlich -
OSUA/204
Forschungsstrasse 111
CH-5232 Villigen PSI
phone: +41 (0)56 310 5297

GPG Key ID = A46BEE1A




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Description: OpenPGP digital signature

[ccp4bb] Building libccp4 static.

[Ian Tickle]

All, I'm trying to build libccp4 statically (after all updates applied) on
Ubuntu 18.04.1 and I get this error:

2: /home/ian/CCP4-7.0/ccp4-7.0-src/chec: not
foundls/triggers/pkgconf-pathfix-nt.trigger: Fixing .pc Files (correct path
structure)
/home/ian/CCP4-7.0/ccp4-7.0-src/checkout/devtools/triggers/pkgconf-pathfix-nt.trigger:
5: /home/ian/CCP4-7.0/ccp4-7.0-src/chec: not
foundls/triggers/pkgconf-pathfix-nt.trigger:
/home/ian/CCP4-7.0/ccp4-7.0-src/checkout/devtools/triggers/pkgconf-pathfix-nt.trigger:
7:
/home/ian/CCP4-7.0/ccp4-7.0-src/checkout/devtools/triggers/pkgconf-pathfix-nt.trigger:
Syntax error: word unexpected (expecting "do")
E: /bin/sh
/home/ian/CCP4-7.0/ccp4-7.0-src/checkout/devtools/triggers/pkgconf-pathfix-nt.trigger
returned with an error code (2)
*** success *** [3/3]

The file 
/home/ian/CCP4-7.0/ccp4-7.0-src/checkout/devtools/triggers/pkgconf-pathfix-nt.trigger
contains:

# REMatch: \/ccp4-7\.0\/lib\/pkgconfig\/.*\.pc

VERBOSE=1
echo 'Fixing .pc Files (correct path structure)'

for p in ccp4-7.0/lib/pkgconfig/*.pc
do
 echo 'Checking '$p' for errors'
 sed -i 's/=\/msys64/=\/c\/msys64/g' $p
 sed -i 's/="\/msys64/="\/c\/msys64/g' $p
 sed -i 's/-L\/msys64/-L\/c\/msys64/g' $p
 sed -i 's/-I\/msys64/-I\/c\/msys64/g' $p
done

Presumably there's a syntax error there somewhere.  I can't see it but then
I'm not a Bourne shell expert.

Any ideas?

Thanks!

-- Ian



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[ccp4bb] REMINDER: DLS/CCP4 data analysis workshop 2018

[David Waterman]

Two weeks remain to apply for the DLS/CCP4 December workshop. Applications
are judged on merit and require a letter of support from a supervisor, so
if you are interested please don't leave it too late to apply.
Best wishes
David

On Wed, 19 Sep 2018 at 14:17, David Waterman  wrote:

> PhD students, postdocs and early career scientists,
>
> Please consider applying for the fifth joint DLS/CCP4 workshop on MX data 
> collection
> and structure solution, to be held at Diamond Light Source, UK from the 2nd
> to the 9th December (with accommodation from the 1st).
>
> This course offers the opportunity for you to work alongside leaders in
> the field of MX on data from your own crystals. For more details please
> check here:
>
> http://www.ccp4.ac.uk/schools/DLS-2018/
>
> The application period is now open and will close on the *7th October*.
> Applicants will be required to submit a CV/resume, describe their projects
> and obtain a letter of support from a supervisor, so please do not wait
> until the last minute to apply! Those with crystals and/or data will be
> given priority.
>
> Best wishes on behalf of the organisers,
>
> David Waterman (CCP4)
>
>



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