[ccp4bb] Open postdtoctoral position - University of California Davis!

[Shabek Lab]

The Shabek lab is looking for a postdoctoral fellow with a strong background in 
structural biology to join immediately to our research group at the University 
of California, Davis (shabek-lab.ucdavis.edu/). 

We use structure- function approaches to study unique signaling pathways and 
their regulation by the Ubiquitin Proteasome System. We have several new funded 
projects by NSF and DOE.   

Qualifications:
• Must be a recent Ph.D. in Biochemistry and/or Plant Biology and/or Structural 
Biology
• Experience in molecular biology, protein purification techniques (experience 
with baculovirus expression is preferred but not required), and 
protein-protein/molecule interactions.
• Experience in structural biology (X-ray crystallography and/or Cryo-EM) is 
preferred. 
• Strong communications skills and ability to train junior scientists

Compensation and benefits for postdocs in UC Davis are the highest in the 
country. 
Davis is a beautiful Californian town located near Sacramento, and close to San 
Fransisco, and several National Parks. 
The Shabek lab has all the advance tools and equipment to conduct structural 
biology experiments. We have access to ALS bemalines in Berkeley and SSRL in 
Stanford, as well as CryoEM facilities (BioEM in Davis or Brookhaven National 
labs).  

To apply:
Email directly to Dr. Nitzan Shabek (nsha...@ucdavis.edu) with the subject 
line: Postdoc in Structural Biology Application.  

Please include a cover letter that highlights your research experience & 
interests, CV, and contact information of 2-3 references.
(please use your institutional email, if possible, otherwise it may go to spam)



To unsubscribe from the CCP4BB list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1

This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list 
hosted by www.jiscmail.ac.uk, terms & conditions are available at 
https://www.jiscmail.ac.uk/policyandsecurity/

Re: [ccp4bb] Fwd: Re: [ccp4bb] Calculate charge on protein surface

[Jon Cooper]

Dear Boaz

I think your original answer must have been steganographic ;-0 Maybe white text 
on a white background ;-? Anyway, I can see it below now that I have started 
typing this reply, and advice is excellent.

My answer to Rafael's question would be to look at apbs:

https://www.poissonboltzmann.org/

This gives you a map of the potential. It's a while since I dabbled with it, 
but I remember using it and it was all pretty workable as a standalone program, 
even for an electrostatics non-specialist. You might need to do some scripting 
to sum up charges, etc, though.

Good luck. Jon.C.

Sent from ProtonMail mobile

 Original Message 
On 28 Dec 2022, 15:57, Boaz Shaanan wrote:

> Boaz Shaanan, Ph.D.
> Dept. of Life Sciences
> Ben Gurion University
> Beer Sheva, Israel
> -- Forwarded message --
> From: בעז שאנן 
> Date: Dec 28, 2022 17:13
> Subject: Re: [ccp4bb] Calculate charge on protein surface
> To: Rafael Marques 
> Cc:
>
>> Hi
>> In ucsf-chimera you can "walk" with the cursor on the surface and it'll show 
>> the actual porential value at each point in the command line. You have to 
>> enable this option in the surface drawing panel. I've used this option quite 
>> often. There may be a similar option in chimerax by now.
>> My 2p.
>> Cheers,
>> Boaz
>>
>> Boaz Shaanan, Ph.D.
>> Dept. of Life Sciences
>> Ben Gurion University
>> Beer Sheva, Israel
>>
>> On Dec 28, 2022 17:03, Rafael Marques  wrote:
>>
>> Hello guys. I hope you are having a great break and still eating the 
>> leftovers of your Xmas turkey.
>>
>> I wonder if there is any software that could provide me numbers regarding 
>> the formal charge of different sides of my structure. Although I can clearly 
>> see that one face of it is pretty red, I would like to know “how much” red 
>> it is.
>>
>> Best wishes
>>
>> Rafael Marques da Silva
>>
>> PhD Student – Structural Biology
>>
>> University of Leicester
>>
>> Mestre em Física Biomolecular
>>
>> Universidade de São Paulo
>>
>> Bacharel em Ciências Biológicas
>>
>> Universidade Federal de São Carlos
>>
>> phone: +55 16 99766-0021
>>
>> "A sorte acompanha uma mente bem treinada"
>>
>> 
>>
>> ---
>>
>> To unsubscribe from the CCP4BB list, click the following link:
>> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1
>
> ---
>
> To unsubscribe from the CCP4BB list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1



To unsubscribe from the CCP4BB list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1

This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list 
hosted by www.jiscmail.ac.uk, terms & conditions are available at 
https://www.jiscmail.ac.uk/policyandsecurity/