Re: [ccp4bb] Issues in diffraction image export compatible to iMosflm

[David Waterman]

Hi,

The latest version of DIALS may be able to read this format. If you can
send me an image off-list I would be happy to check. Once in DIALS, it also
may be possible to export the dataset in CBF format.

Best wishes
David


On Tue, 10 Oct 2023, 06:28 Vyankatesh Rajmane, 
wrote:

> Dear all,
> We have collected diffraction data on a Rigaku FR-X machine with a
> HyPix-6000HE detector. The images are in .rod_img format. We are trying to
> export the data in iMosflm compatible format using the options available in
> CrysAlisPro RED software provided by Rigaku. But the images generated show
> vertical strips instead of diffraction spots which gives error in
> processing. Can anyone suggest a method to convert the .rod_img images in
> iMosflm compatible format. Thank you!
>
> --
>  Vyankatesh Rajmane
> E-mail: vyankates...@gmail.com
>
>
> --
>
> To unsubscribe from the CCP4BB list, click the following link:
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Re: [ccp4bb] Issues in diffraction image export compatible to iMosflm

[ameya benz]

Vyankatesh,

Follow Kay's suggestion and check.  I was trying to say same thing in chat.
On our instrument,  we can process images too in xds.

Best of luck

- Ameya

On Tue, 10 Oct 2023, 8:50 pm Kay Diederichs, 
wrote:

> If you export the images in XDS format, then you get .pck files that
> MOSFLM certainly can read, plus a XDS.INP with the geometry parameters.
>
> Hope this helps,
> Kay
>
> On Tue, 10 Oct 2023 10:47:51 +0530, Vyankatesh Rajmane <
> vyankates...@gmail.com> wrote:
>
> >Dear all,
> >We have collected diffraction data on a Rigaku FR-X machine with a
> >HyPix-6000HE detector. The images are in .rod_img format. We are trying to
> >export the data in iMosflm compatible format using the options available
> in
> >CrysAlisPro RED software provided by Rigaku. But the images generated show
> >vertical strips instead of diffraction spots which gives error in
> >processing. Can anyone suggest a method to convert the .rod_img images in
> >iMosflm compatible format. Thank you!
> >
> >--
> > Vyankatesh Rajmane
> >E-mail: vyankates...@gmail.com
> >
> >
> >
> >To unsubscribe from the CCP4BB list, click the following link:
> >https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1
> >
> >This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a
> mailing list hosted by www.jiscmail.ac.uk, terms & conditions are
> available at https://www.jiscmail.ac.uk/policyandsecurity/
> >
>
> 
>
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Re: [ccp4bb] Issues in diffraction image export compatible to iMosflm

[Kay Diederichs]

If you export the images in XDS format, then you get .pck files that MOSFLM 
certainly can read, plus a XDS.INP with the geometry parameters.

Hope this helps,
Kay

On Tue, 10 Oct 2023 10:47:51 +0530, Vyankatesh Rajmane  
wrote:

>Dear all,
>We have collected diffraction data on a Rigaku FR-X machine with a
>HyPix-6000HE detector. The images are in .rod_img format. We are trying to
>export the data in iMosflm compatible format using the options available in
>CrysAlisPro RED software provided by Rigaku. But the images generated show
>vertical strips instead of diffraction spots which gives error in
>processing. Can anyone suggest a method to convert the .rod_img images in
>iMosflm compatible format. Thank you!
>
>--
> Vyankatesh Rajmane
>E-mail: vyankates...@gmail.com
>
>
>
>To unsubscribe from the CCP4BB list, click the following link:
>https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1
>
>This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing 
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>



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[ccp4bb] Registration now open for CCP4 Study Weekend 2024 - "Decision making in MX - how to be a productive structural biologist".

[Karen McIntyre - STFC UKRI]

Dear all,

Registration is now open for the 2024 CCP4 study weekend entitled "Decision 
making in MX - how to be a productive structural biologist".

This year the CCP4 Study Weekend will be held as a hybrid event from the 3rd to 
5th January 2024, enabling people to choose whether to attend in-person or 
virtually. The in-person event will be held at the East Midlands Conference 
Centre, Nottingham, UK.


We would like to invite you to another iteration of the ever popular CCP4 Study 
Weekend - to start the year 2024 with a lot of fresh ideas, new insights and 
(hopefully) new friends and contacts to boost. As always it will be an eclectic 
mix of bleeding-edge science, in-depth presentations, discussion panel, 
poster-sessions, hands-on tutorials and plenty of opportunities for social 
interactions. For full details, programme, logistics and registration, please 
visit the Study Weekend website.



There is no better way to start 2024 than to put participation in that exciting 
meeting at the top of your "New Year's Resolutions" list!

Key Dates:
* Early bird registration final date: 19 November 2023;
* Standard Student bursaries are open to all students registering during early 
bird period i.e. now until 19 November which cover the cost of registration 
plus one night accommodation;
* Travel bursaries are available for students and young postdocs studying at 
overseas labs to help cover cost of travel to UK. The deadline for applications 
is 31 October 2023;
* Registration for in-person delegates closes 4 December 2023 (or earlier if 
in-person places sell out although you will be able to join the in-person 
waitlist).

We hope to see you there!

Scientific Organisers:
  Helen Ginn (Deutsches Elektronen-Synchrotron, DESY, Germany)
  Nick Pearce (Linköping University, Sweden)
  Clemens Vonrhein (Global Phasing Ltd, UK)

Administrative Organisers:
  Karen McIntyre (CCP4, UK)



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Re: [ccp4bb] Issues in diffraction image export compatible to iMosflm

[Harry Powell]

Hi

If you’re not in a hurry, I should be able to take a look and see what needs to 
be done (I’m a little busy right now, but I do know more than a ittle about 
Mosflm and image formats). Otherwise I’d contact Mathias Meyer directly at 
Rigaku Oxford Diffraction, who should be able to point you in the right 
direction.

Best wishes

Harry

> On 10 Oct 2023, at 06:17, Vyankatesh Rajmane  wrote:
> 
> Dear all,
> We have collected diffraction data on a Rigaku FR-X machine with a 
> HyPix-6000HE detector. The images are in .rod_img format. We are trying to 
> export the data in iMosflm compatible format using the options available in 
> CrysAlisPro RED software provided by Rigaku. But the images generated show 
> vertical strips instead of diffraction spots which gives error in processing. 
> Can anyone suggest a method to convert the .rod_img images in iMosflm 
> compatible format. Thank you!  
> 
> -- 
>  Vyankatesh Rajmane
> E-mail: vyankates...@gmail.com
> 
> 
> To unsubscribe from the CCP4BB list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1
> 



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[ccp4bb] Last week to apply for tenure track Data-driven life sciences fellowships

[Nicholas Pearce]

Hi all,

If you're interested in starting your own research group in data-driven life 
sciences, it's currently the last week for applications for positions available 
all over Sweden in multiple disciplines (including structural biology!).

Each recruitment package has a budget of 17 MSEK to cover salary for 5 years as 
DDLS Fellow, two PhD positions and two postdoc positions, as well as running 
costs. Most of the Fellow positions are tenure-track, and the respective 
hosting universities/organizations take long-term responsibility of tenured 
group leaders.

More information here: https://www.scilifelab.se/data-driven/fellows/

Feel free to email if you have any questions!


Thanks,

Nick


———



Nicholas Pearce

Assistant Professor in Bioinformatics

SciLifeLab | Data-Driven Life Sciences (DDLS) Fellow

Linköping University

Sweden




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