[ccp4bb] Postdoctoral Research Associate –Invasive fungal and bacterial diseases – (Brookhaven National Laboratory, Upton, New York)
Dear All: Brookhaven National Laboratory has Postdoc openings to research molecular and structural determinants involved in invasive fungal and bacterial diseases. The positions will also study the mechanisms of drug resistance and develop improved or novel drugs. If you are interested, please see the job description details through the link provided below. https://jobs.bnl.gov/job/upton/postdoctoral-research-associate-invasive-fungal-and-bacterial-diseases/3437/59219260336 Warm regards, Qun Liu Biology Department & NSLS-II Brookhaven National Laboratory To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
Re: [ccp4bb] nearestcell
Dear all, a short summary: - SAUC and the Phenix tool worked well. - SIMBAD was also pointed out to me, but it stops with an error message both in my local CCP4 installation and in "CCP4 online". - The https://app.strubi.ox.ac.uk/nearest-cell/nearest-cell.cgi alternative to http://www.strubi.ox.ac.uk/nearest-cell/nearest-cell.cgi does not respond - "othercell" is also useful but for other purposes, and it is in CCP4 thanks to all who responded so quickly! Kay On Wed, 27 Dec 2023 18:38:15 +, Kay Diederichs wrote: >Dear all, > >I seem to remember a tool called "nearestcell", a command-line equivalent of >the Oxford Nearest-Cell web server which appears to be offline. >However I cannot locate that tool in CCP4 nor elsewhere. Can anyone point me >to it or give alternatives, please? (I did try the PDB's advanced search but >it is not made for this purpose) > >Thanks, and a happy and successful 2024 to everybody! > >Kay > > > >To unsubscribe from the CCP4BB list, click the following link: >https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 > >This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing >list hosted by www.jiscmail.ac.uk, terms & conditions are available at >https://www.jiscmail.ac.uk/policyandsecurity/ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
Re: [ccp4bb] nearestcell
That is a live link to sauc, but I have not updated the database from the PDB in a while. Let me know if there is an urgent need for an update, Otherwise I am planning one for March. I normally build the database from COD and the PDB, but if CCDC wishes, we can add the CSD to the mix. For the longer term, would anybody be willing to provide an institutional home? Regards, Herbert On Wed, Dec 27, 2023 at 1:47 PM Mike S wrote: > Hi Kay, > > http://flops.arcib.org:8084/sauc-1.1.1/ > > similar to the nearest-cell server, which seems to change its link and is > harder to find (or stale link) > https://app.strubi.ox.ac.uk/nearest-cell/nearest-cell.cgi > > HTH, > Mike > > On Wed, Dec 27, 2023 at 1:39 PM Kay Diederichs < > kay.diederi...@uni-konstanz.de> wrote: > >> Dear all, >> >> I seem to remember a tool called "nearestcell", a command-line equivalent >> of the Oxford Nearest-Cell web server which appears to be offline. >> However I cannot locate that tool in CCP4 nor elsewhere. Can anyone point >> me to it or give alternatives, please? (I did try the PDB's advanced search >> but it is not made for this purpose) >> >> Thanks, and a happy and successful 2024 to everybody! >> >> Kay >> >> >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 >> >> This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a >> mailing list hosted by www.jiscmail.ac.uk, terms & conditions are >> available at https://www.jiscmail.ac.uk/policyandsecurity/ >> > > -- > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 > To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
Re: [ccp4bb] nearestcell
Hi Kay, http://flops.arcib.org:8084/sauc-1.1.1/ similar to the nearest-cell server, which seems to change its link and is harder to find (or stale link) https://app.strubi.ox.ac.uk/nearest-cell/nearest-cell.cgi HTH, Mike On Wed, Dec 27, 2023 at 1:39 PM Kay Diederichs < kay.diederi...@uni-konstanz.de> wrote: > Dear all, > > I seem to remember a tool called "nearestcell", a command-line equivalent > of the Oxford Nearest-Cell web server which appears to be offline. > However I cannot locate that tool in CCP4 nor elsewhere. Can anyone point > me to it or give alternatives, please? (I did try the PDB's advanced search > but it is not made for this purpose) > > Thanks, and a happy and successful 2024 to everybody! > > Kay > > > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are > available at https://www.jiscmail.ac.uk/policyandsecurity/ > To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
Re: [ccp4bb] nearestcell
Hi Kay, to address "(...) not elsewhere (...)", in Phenix GUI go to Tools then down to "Search PDB symmetry...". I've never used it myself nor do I know who added it in Phenix but from the description it looks like what you're looking for. Let us know if you have any problems with it. All the best, Pavel On Wed, Dec 27, 2023 at 10:39 AM Kay Diederichs < kay.diederi...@uni-konstanz.de> wrote: > Dear all, > > I seem to remember a tool called "nearestcell", a command-line equivalent > of the Oxford Nearest-Cell web server which appears to be offline. > However I cannot locate that tool in CCP4 nor elsewhere. Can anyone point > me to it or give alternatives, please? (I did try the PDB's advanced search > but it is not made for this purpose) > > Thanks, and a happy and successful 2024 to everybody! > > Kay > > > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are > available at https://www.jiscmail.ac.uk/policyandsecurity/ > To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
Re: [ccp4bb] nearestcell
Are you thinking of "othercell" ? On 12/27/2023 10:38 AM, Kay Diederichs wrote: Dear all, I seem to remember a tool called "nearestcell", a command-line equivalent of the Oxford Nearest-Cell web server which appears to be offline. However I cannot locate that tool in CCP4 nor elsewhere. Can anyone point me to it or give alternatives, please? (I did try the PDB's advanced search but it is not made for this purpose) Thanks, and a happy and successful 2024 to everybody! Kay To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
[ccp4bb] nearestcell
Dear all, I seem to remember a tool called "nearestcell", a command-line equivalent of the Oxford Nearest-Cell web server which appears to be offline. However I cannot locate that tool in CCP4 nor elsewhere. Can anyone point me to it or give alternatives, please? (I did try the PDB's advanced search but it is not made for this purpose) Thanks, and a happy and successful 2024 to everybody! Kay To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
[ccp4bb] Postdoctoral Researcher, Membrane Structural and Functional Biology, Caffrey Lab, Trinity College Dublin, Ireland
*Postdoctoral Research Fellow* *Membrane Structural and Functional Biology – Caffrey Lab* *Trinity College Dublin, Ireland* *Post Summary. *The Membrane Structural and Functional Biology group seeks to solve the structure of medically important membrane proteins for use in structure/function studies and for structure-based therapeutics development. Target proteins are involved in communicable and non-communicable diseases. A postdoctoral research position is available in the Group. We are looking for a highly motivated, creative, and hardworking individual with experience in membrane protein structural and functional biology to join our team at Trinity in a lab that offers superb facilities and a supportive environment. A primary responsibility will be to take a leadership role in completing and publishing several extant projects in the Group that are at various stages of fruition. *Person Specification. *The candidate must have a Ph.D. in biochemistry, biophysics, molecular biology, or a related field. Demonstrated success in recombinant membrane protein production, purification, and functional characterization along with expertise in macromolecular X-ray crystallography and/or cryo-electron microscopy is required. The candidate should be a highly motivated and creative individual who enjoys working as part of a collaborative, multidisciplinary team. Strong leadership, communication and teaching skills are decided assets. A willingness and freedom to travel worldwide on short-term projects is expected. *Salary.* €42,782 - €50,539 per annum depending on experience *Closing Date.* Until the position is filled *Principal Investigator. *Martin Caffrey https://www.tcd.ie/Biochemistry/research/caffrey/ *Application Procedure.* Candidates are asked to submit a letter detailing education, training, and laboratory experience. In the letter, the candidate should outline why they feel they are suitable for the position in an interdisciplinary group that will involve extensive interaction with collaborators and data collection at facilities around the globe. The letter of application must be accompanied by a comprehensive CV to include the names and contact details of two referees (email addresses and phone numbers to be provided). At least one referee should be an individual the candidate has worked with and who has agreed to provide a letter of reference on the candidate’s behalf. The letter and CV should be combined in a single PDF and emailed to martin.caff...@tcd.ie. -- Martin Caffrey martin.caff...@tcd.ie Schools of Medicine and Biochemistry & Immunology Trinity Biomedical Sciences Institute, Trinity College Dublin Room 5.62,152-160 Pearse St., Dublin D02 R590, Ireland website: http://www.tcd.ie/Biochemistry/research/caffrey/ phone: +353-(0)1-896-4253; mobile: +353-(0)86-818-7704 To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
