I just change MODEL 0 to MODEL 1 then it works fine.
John
On Fri, Aug 27, 2021 at 11:03 AM Schreuder, Herman /DE <
herman.schreu...@sanofi.com> wrote:
> Dear Nick,
>
>
>
> I had just looked at a pdb downloaded from the alphafold server without
> problems. However, then I realized that I had looked at the alphafold model
> after I had it superimposed on my own structure. Loading the alphafoldmodel
> directly in coot failed for me as well.
>
>
>
> By looking into the pdb file, I discovered that the alphafold file has a
> “MODEL” record just before the coordinates and an “ENDMDL” record after the
> coordinates. After deleting these two records, the alphafold pdb loads fine.
>
>
>
> Hope this helps,
>
> Herman
>
>
>
> *Von:* CCP4 bulletin board *Im Auftrag von *Nicholas
> Keep
> *Gesendet:* Freitag, 27. August 2021 16:51
> *An:* CCP4BB@JISCMAIL.AC.UK
> *Betreff:* Re: [ccp4bb] A "funny" thing related to AlphaFold2
>
>
>
> Has anyone made use of an Alpha Fold PDB as opposed to CIF. On the half
> dozen or so I have tried to read into CCP4mg or coot the PDB has always
> failed but the CIF is fine. I can then write out a PDB if I want.
>
> I could add to the conspiracy theories that this is EBI trying to
> normalise use of CIF format, but I suspect it is something much more
> mundane, that should be addressed.
>
> Best wishes
>
> Nick
>
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