Re: [ccp4bb] COOT Real Space Refinement keyboard shortcut??
Dear Chris Are you trying to use the standard key binding a refine with auto-zone? Mine does not work whilst others such as m and n for zooming out and in do. For a I get the following message in the terminal: (graphics-general-key-press-hook 97) Key 97 not found in (scheme) key bindings Any ideas on how to fix this, anyone? I am using Coot 0.6.2 on CentOS 2.6.32-71.29.1.el6.x86_64 x86_64 Regards Petra -Original Message- From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Christopher Browning Sent: 27 March 2012 15:45 To: ccp4bb Subject: [ccp4bb] COOT Real Space Refinement keyboard shortcut?? Hi, I was wondering whether there was a way to assign a keyboard shortcut to the real space refine button in COOT. Atleast this way one does not have to keep looking back to where the real space refine button is to click it if you want to carry out the refinement. Cheers, Chris -- Dr. Christopher Browning Post-Doctor to Prof. Petr Leiman EPFL BSP-416 1015 Lausanne Switzerland Tel: 0041 (0) 02 16 93 04 40
Re: [ccp4bb] COOT Real Space Refinement keyboard shortcut??
A works as described but t is better! In coot 0.6.2 I added the line (add-key-binding Triple Refine t (lambda () (manual-refine-residues 1))) to the file ~/.coot-preferences/coot-preferences.scm Many thanks Petra From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of Paul Emsley [paul.ems...@bioch.ox.ac.uk] Sent: 13 April 2012 13:20 To: ccp4bb Subject: Re: [ccp4bb] COOT Real Space Refinement keyboard shortcut?? Are you trying to use the standard key binding a refine with auto-zone? Mine does not work whilst others such as m and n for zooming out and in do. For a I get the following message in the terminal: (graphics-general-key-press-hook 97) Key 97 not found in (scheme) key bindings Any ideas on how to fix this, anyone? The activation order is: 1) click Real Space Refine icon 2) click atom at in the residue at the centre of range (and centre of screen, typically) 3) press a (i.e. the A key) This was built into Coot pre-user-defined-key-bindings. I rarely, if ever, use it now that there is the t short-cut. In fact, as I write this, I think that I might well take it away so that A can be used for something else instead. Paul.
[ccp4bb] FreeR flag value swap
I have a mtz file (output from phenix AutoSol and AutoBuild) where the FreeR flag for the test set has a value of 1 and and the working set has value 0. This is opposite to the ccp4 default where the FreeR set used within refinement is flagged as 0. Is there a way to swap the two around so that my file has the ccp4 default arrangement? Preferably I would like to avoid conversion to ASCII reflection file formats (and back to mtz). Many thanks Petra -- Dr Petra Lukacik NIDDK, NIH Building 50, Room 4507 50 South Drive Bethesda MD 20892 USA Tel: 301 594 9231 -
