Re: [ccp4bb] Wavelength mismatch during PDB deposition

[Santhosh G]

Dear Robbie,

Thank you for the prompt response.

I have verified my PDB file for remark 200 and 3, but I couldn't find the 
wavelength information.

For refinement REFMAC 5.8.0230 was used from CCP4i.

I have tried to convert it into mmCIF using AIMLESS and MOLREP log with 
PDB_extract. Then I have gone through the CIF file, but no wavelength 
information was not observed in the file.



Santhosh



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[ccp4bb] Wavelength mismatch during PDB deposition

[Santhosh G]

Dear all,

I got an issue after submitting my structure to PDB. 

The exact message is as follows...

1. Wavelength mismatch (pdb= 0.9794 : sf= 0.9795)!

Please provide the correct wavelength value used for the structure 
determination.

The data I have collected at the synchrotron with wavelength-0.97947.

How PDB extracts wavelength from PDB file, which I have not provided during the 
submission.

Even though it calculates wavelength, what are situations that lead to the 
discrepancy.

Please give suggestions.


Thanks and regards,
Santhosh



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Re: [ccp4bb] No wavelength value was found in SF file

[Santhosh G]

Thank you Kay.



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[ccp4bb] No wavelength value was found in SF file

[Santhosh G]

Hi all,

Iam getting an error while validating my structure in PDB validation server as 
follows...

" No wavelength value was found in SF file "

How to edit SF file (mtz) to add wavelength information.



Santhosh



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