Re: [ccp4bb] [COOT] coot install on redhat

[Kay Diederichs]

Hi Heidi,

why don't you just install the latest binary distribution? That's much less hassle ... just go to http://www.ysbl.york.ac.uk/~emsley/software/binaries/nightlies/pre-release/ and grab e.g.

coot-0.5-pre-1-revision-1003-binary-Linux-i386-fedora-5.tar.gz

(Fedora 6 corresponds to RHEL5, thus Fedora 5 binaries are OK)




yum whatprovides <thatlibrary>
and install the library, again using yum.

HTH,

Kay


Heidi Schubert schrieb:

Then un-tar it under /usr/local/src, and establish a symlink (ln -s) between /usr/local/bin/coot and the bin/coot of the freshly unpacked distribution. If you then run coot, and the loader complains that a certain library is missing, just ask

Hi All,


Coot requires the following:
1) C++ compiler ? okay got that
2) gtk+(1.2) ?requires:

                glib required newer pgk-config ? okay got that

        b)Pango 1.13 ? okay got that
        c)ATK 1.9 ? problems starts here.
                During ./configure it gives the following:

checking pkg-config is at least version 0.16... yes
checking for GLIB - version >= 2.0.0...
*** 'pkg-config --modversion glib-2.0' returned 2.16.3, but GLIB (2.4.7)
*** was found! If pkg-config was correct, then it is best
*** to remove the old version of GLib. You may also be able to fix the error
*** by modifying your LD_LIBRARY_PATH enviroment variable, or by editing
*** /etc/ld.so.conf. Make sure you have run ldconfig if that is
*** required on your system.
*** If pkg-config was wrong, set the environment variable PKG_CONFIG_PATH
*** to point to the correct configuration files
no configure: error:
*** GLIB 2.0.0 or better is required. The latest version of
*** GLIB is always available from ftp://ftp.gtk.org/. If GLIB is installed
*** but not in the same location as pkg-config add the location of the file
*** glib-2.0.pc to the environment variable PKG_CONFIG_PATH.









Sorry I'm so linux library illterate
Heidi

I'm not a systems administrator ? I just play one at work. Can someone help me over these hurdles installing the newest version of coot. a) at least Glib 2.12 ? I think the problem is here, I successfully installed 2.16.3 but..... now glib appears to install okay, puts a directory in /usr/local/lib 1)I ran ldconfig but this didn't do anything. I have no idea how one would edit the ld.so.conf file. 2) LD_LIBRARY_PATH=/usr/local/Linux-bubbles/lib:/home/local/LINUX//ccp4-6.0.2/lib:/ usr/local/Linux-bubbles/lib:/home/local/LINUX//ccp4-6.0.2/lib:/home/local/LINUX/ /ccp4-6.0.2/extralib:/home/local/LINUX//ccp4-6.0.2/extralib ?extralib doesn't exist anyway and /ccp4-6.0.2/lib doesn't have a glib file. There is a glib directory in the /linux-bubbles/lib but it says version 1.2.10 not 2.4.7 3)I'm using REDHAT 5. I'm sitting at a desktop box but installing everything into /usr/local on our server. Where do I look for this old version of glib and will it be okay to delete it? I'm worried I'm running into versions that are loaded on the desktop and not on the server, but I can't find them.

--
Kay Diederichs                http://strucbio.biologie.uni-konstanz.de
email: [EMAIL PROTECTED]    Tel +49 7531 88 4049 Fax 3183
Fachbereich Biologie, Universität Konstanz, Box M647, D-78457 Konstanz

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