Forgive what may be a very simple question… I have recently installed coot using the very nice CCP4 .dmg (0.7.0-i386) - which now puts coot into /Applications I now need to set a $PATH to coot, such that various home-made scripts now 'know' where it is
Here I have hit a hurdle. Which binary file do I need to point a path variable to? >From terminal I can use the command ' open -a coot ' - everything works fine >and dandy. However, I cannot use ' /Applications/coot.app/Contents/MacOS/coot ' reliably - sometimes it works, but most of the time it crashes with the following errors... Nov 23 12:17:02 coot-real[80005] <Error>: kCGErrorIllegalArgument: CGSGetSurfaceBounds Nov 23 12:17:02 coot-real[80005] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged. Nov 23 12:17:02 coot-real[80005] <Error>: kCGErrorIllegalArgument: CGSBindSurface: Invalid window 0x8da Nov 23 12:17:02 coot-real[80005] <Error>: kCGErrorIllegalArgument: CGSBindSurface: Invalid window 0x8da Nov 23 12:17:02 coot-real[80005] <Error>: kCGErrorIllegalArgument: CGSBindSurface: Invalid window 0x8da "coot-real" also fails - as it's obviously looking in the wrong place for files… Acquiring application resources from /Users/charlesb/autobuild/Darwin-ras03-006.rl.ac.uk/coot-0.7.0-gtk2-python/share/coot/cootrc INFO:: splash_screen_pixmap_dir /Users/charlesb/autobuild/Darwin-ras03-006.rl.ac.uk/coot-0.7.0-gtk2-python/share/coot/pixmaps Any ideas or suggestions would be very welcome. With thanks, Antony. --- Dr Antony W Oliver Senior Research Fellow CR-UK DNA Repair Enzymes Group Genome Damage and Stability Centre Science Park Road University of Sussex Falmer, Brighton, BN1 9RQ email: antony.oli...@sussex.ac.uk tel (office): +44 (0)1273 678349 tel (lab): +44 (0)1273 677512 On Nov 23, 2012, at 1:19 PM, Paul Emsley wrote:
