[ccp4bb] OSX 10.6, Fink CCP4 install problem

2010-08-20 Thread David Shin

Hi -

Got a new computer, was trying to install CCP4 following the Scott Lab 
page (64 bit install) -

http://sage.ucsc.edu/~wgscott/xtal/wiki/index.php/64-bit_Fink_for_10.5_and_10.6

First had to install fink - tried to follow that page, but didn't have the 
cvs command (forgot about the xcode, etc.). So installed Fink via:


http://www.finkproject.org/download/srcdist.php

This install put fink into the sw/ directory, not sw64/

So after fink was running, I went back to the
http://sage.ucsc.edu/~wgscott/xtal/wiki/index.php/64-bit_Fink_for_10.5_and_10.6
page, and started from For now on, I will use /sw*  to mean /sw or 
/sw64 as appropriate.


ie. edited files:
When it is done, edit /sw*/etc/fink.conf and change line 4 to look like 
this:

##
Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
This activates the unstable branch.
Then issue
source /sw*/bin/init.sh
fink selfupdate-cvs
fink -y update-all
fink scanpackages
#
everything was fine until I did this:
First you need to edit the /sw64/etc/apt/sources.list file and add the 
following three lines to the bottom of that file


(I changed the sources.list file in the sw/ directory)
#
deb http://sage.ucsc.edu/fink_intel_10.6_64bitstable main crypto
deb http://sage.ucsc.edu/fink_intel_10.6_64bit unstable main crypto
deb http://sage.ucsc.edu/fink_intel_10.6_64bit local main 


then wehn I tried to install coot and ccp4 using the next part:
#
fink scanpackages
sudo apt-get update
sudo apt-get dist-upgrade
sudo apt-get install coot
#
I found out I killed fink.

ie. here's the error message after running fink scanpackages:

ERROR: Configuration file /sw64/etc/fink.conf not found.
/sw/bin/dpkg: error processing fink (--configure):
 subprocess post-installation script returned error exit status 1
Errors were encountered while processing:
 fink
E: Sub-process /sw/bin/dpkg returned an error code (1)


I see that the previous edit made the update look for something in /sw64/ 
which of course didn't exist, but now my version of fink is dead...


ie. I type fink scanpackages, or any fink command, and the command is not 
found.


I type which fink and nothing returns, but everything is still in the 
sw/ directory.


What do you think? now that I have the cvs command up and going, I just 
delete the sw/ directory and start over, or is there some fix I can do?


Thanks,
Dave


Re: [ccp4bb] OSX 10.6, Fink CCP4 install problem

2010-08-20 Thread William G. Scott
Hi David:

I think you need to start with the pure 64-bit fink from cvs in order to
get this to work.  All the errors are a consequence of using the 32-bit
version.  You can't mix them.  I have no idea why they still don't have a
binary installer, but they don't.

Email me directly if you need more info.  I'm on my way home, somewhere
obscure that I can't pronounce in Northern California that appears to have
been carefully preserved in leucite since the day Jerry Garcia became
Dead, so it might take a day or so to respond...

Bill

David Shin wrote:
 Hi -

 Got a new computer, was trying to install CCP4 following the Scott Lab
 page (64 bit install) -
 http://sage.ucsc.edu/~wgscott/xtal/wiki/index.php/64-bit_Fink_for_10.5_and_10.6

 First had to install fink - tried to follow that page, but didn't have the
 cvs command (forgot about the xcode, etc.). So installed Fink via:

 http://www.finkproject.org/download/srcdist.php

 This install put fink into the sw/ directory, not sw64/

 So after fink was running, I went back to the
 http://sage.ucsc.edu/~wgscott/xtal/wiki/index.php/64-bit_Fink_for_10.5_and_10.6
 page, and started from For now on, I will use /sw*  to mean /sw or
 /sw64 as appropriate.

 ie. edited files:
 When it is done, edit /sw*/etc/fink.conf and change line 4 to look like
 this:
 ##
 Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
 This activates the unstable branch.
 Then issue
 source /sw*/bin/init.sh
 fink selfupdate-cvs
 fink -y update-all
 fink scanpackages
 #
 everything was fine until I did this:
 First you need to edit the /sw64/etc/apt/sources.list file and add the
 following three lines to the bottom of that file
 
 (I changed the sources.list file in the sw/ directory)
 #
 deb http://sage.ucsc.edu/fink_intel_10.6_64bitstable main crypto
 deb http://sage.ucsc.edu/fink_intel_10.6_64bit unstable main crypto
 deb http://sage.ucsc.edu/fink_intel_10.6_64bit local main
 
 then wehn I tried to install coot and ccp4 using the next part:
 #
 fink scanpackages
 sudo apt-get update
 sudo apt-get dist-upgrade
 sudo apt-get install coot
 #
 I found out I killed fink.

 ie. here's the error message after running fink scanpackages:

 ERROR: Configuration file /sw64/etc/fink.conf not found.
 /sw/bin/dpkg: error processing fink (--configure):
   subprocess post-installation script returned error exit status 1
 Errors were encountered while processing:
   fink
 E: Sub-process /sw/bin/dpkg returned an error code (1)


 I see that the previous edit made the update look for something in /sw64/
 which of course didn't exist, but now my version of fink is dead...

 ie. I type fink scanpackages, or any fink command, and the command is not
 found.

 I type which fink and nothing returns, but everything is still in the
 sw/ directory.

 What do you think? now that I have the cvs command up and going, I just
 delete the sw/ directory and start over, or is there some fix I can do?

 Thanks,
 Dave