Re: [ccp4bb] Software for RNA model building
Dear Rafal, I'm developing a graphical tool to construct RNA 3D models. You can find all the details at this address: http://www.bioinformatics.org/assemble/ It is open-source. At now, i'm searching beta-testers before the official 1.0 release. If you're interested, I will send you an email explaining you how to download the tool. Best, Fabrice Jossinet -- Laboratoire de Bioinformatique, modelisation et simulation des acides nucleiques Institut de biologie moleculaire et cellulaire du CNRS UPR9002, Architecture et Reactivite de l'ARN 15 rue Rene Descartes F - 67084 Strasbourg
[ccp4bb] Software for RNA model building
Sorry, for mistake in the title of my last post. Please ingnore it. Dear CCP4BB users, Sorry, for non-CCP4 question. I'm looking for any freeware program for molecule model building, especially for perfect matching RNA duplex. Could you help me? I found some programs with options of de novo protein chain building, but without options of DNA/RNA chain building. With best wishes Rafal |--| |Rafal Dolot, Ph.D.| | | |Polish Academy of Sciences| |Centre of Molecular and Macromolecular Studies| |Department of Bioorganic Chemistry| |Sienkiewicza 112 | |90-363 Lodz, Poland | |Phone: +48(42)6803215 | |Cell: +48 502897781 | |--|
Re: [ccp4bb] Software for RNA model building
Dear Rafal, The program 'Coot' or (X)3DNA can easily do this for you. Regards Kristof On 12 May 2009, at 10:05, Rafal Dolot wrote: Sorry, for mistake in the title of my last post. Please ingnore it. Dear CCP4BB users, Sorry, for non-CCP4 question. I'm looking for any freeware program for molecule model building, especially for perfect matching RNA duplex. Could you help me? I found some programs with options of de novo protein chain building, but without options of DNA/RNA chain building. With best wishes Rafal |--| |Rafal Dolot, Ph.D.| | | |Polish Academy of Sciences| |Centre of Molecular and Macromolecular Studies| |Department of Bioorganic Chemistry| |Sienkiewicza 112 | |90-363 Lodz, Poland | |Phone: +48(42)6803215 | |Cell: +48 502897781 | |--| --- Kristof Van Hecke, PhD Biomolecular Architecture Celestijnenlaan 200F 3001 Heverlee (Leuven) Belgium ---
Re: [ccp4bb] Software for RNA model building
I dare say that make-na can do it even easier (no need to install anything): http://structure.usc.edu/make-na/server.html It is for *very* simple stuff though. James On May 12, 2009, at 1:11 AM, Kristof Van Hecke wrote: Dear Rafal, The program 'Coot' or (X)3DNA can easily do this for you. Regards Kristof On 12 May 2009, at 10:05, Rafal Dolot wrote: Sorry, for mistake in the title of my last post. Please ingnore it. Dear CCP4BB users, Sorry, for non-CCP4 question. I'm looking for any freeware program for molecule model building, especially for perfect matching RNA duplex. Could you help me? I found some programs with options of de novo protein chain building, but without options of DNA/RNA chain building. With best wishes Rafal |--| |Rafal Dolot, Ph.D.| | | |Polish Academy of Sciences| |Centre of Molecular and Macromolecular Studies| |Department of Bioorganic Chemistry| |Sienkiewicza 112 | |90-363 Lodz, Poland | |Phone: +48(42)6803215 | |Cell: +48 502897781 | |--| --- Kristof Van Hecke, PhD Biomolecular Architecture Celestijnenlaan 200F 3001 Heverlee (Leuven) Belgium ---
