Re: [ccp4bb] funding experiences - query

2015-04-19 Thread Bernhard Rupp (Hofkristallrat a.D.)
Hi Fellows,

thanks to all who have responded to my query. The response were very
elucidating,
and at the same time 
(a) consistent and 
(b) depressing, even for my slightly cynical standards

As no good deed goes unpunished, I wonder whether the respondents (and
anyone else) have
a reasonable idea how much resources and/or money/fte allocated to each
project they spend (relatively is enough) from
(a) conception to data (bioinfo, cloning variants, expression screening,
scale-up, purification, crystal screening, 
mounting, data collection) compared to (b) data to structure (including
analysis and validation).

It is relatively easy to get agency funding numbers, funding success rates
etc, but those 
break-up data are elusive, which is probably due to the fact that we
re-engineer and
 divert a lot from other sources to get the prelims...  

Many thanks again to everyone for responding. 

Best regards, BR
-
Bernhard Rupp
001 (925) 209-7429
+43 (676) 571-0536
b...@ruppweb.org
hofkristall...@gmail.com
http://www.ruppweb.org/
-
Physicist are there to find the laws of nature. 
Engineers are there to work around them.
-


Re: [ccp4bb] funding experiences - query

2015-04-14 Thread Edward A. Berry

One of my projects was caught in the transition- as long as we didn't have
crystals diffracting to high resolution, the project was highly significant
but was denied (continuation of) funding for lack of confidence we
would get the structure. After we got good crystals and phased them
they said sure, you can solve the structure, but what is the broader context?
What questions are you trying to answer? What is your hypothesis?

Once you get good crystals, you can probably solve the structure
in a year by yourself. Is it justified to ask for 5 years and a Post-Doc
to pay back for effort already successfully invested? or to bootstrap
the next project up to the fundable stage?
Maybe propose four years of cell biology, mutagenesis, and drug-binding
experiments to test the hypotheses you are going to be able to make once
you have the structure for clues?

ed

On 04/14/2015 03:06 PM, Anastassis Perrakis wrote:

Dear Bernhard,

I think you need to clarify the first question. “Denied funding’ means to me 
that a committee officially denied the proposal for these reasons, which is 
rare, as typically they are very careful, or at least that is my experience. 
However, its rather common that one of the referees uses any of these as a 
negative point during a review.

Most importantly though, I think that these days almost any grant that is 
purely based on determining structures will be denied by definition. Thus I 
doubt if the question as it is posed now warrants investigation … I think the 
time for ‘crystallographic studies’ has passed and almost all grants that 
include structural work are in the context of a wider scientific framework...

best

Tassos


Were you denied funding for a structure study because you did not have yet
(a) large scale protein expression
(b) first crystals
(c) diffraction crystals
(d) data
(e) maps

Did you have to 'reverse engineer' an application, i.e. you had the
structure already (almost) and
then write the grant?

Any other peculiarities/comments you received, and what you feel would need
improvement/should be addressed.

Again, any comments will be confidential and will contribute to raise
awareness for the special
requirements of, and funding for, the significant up-front work necessary
for crystallographic studies.
Get it off your soul and make the world a better place.

Thanks and best regards, BR
-
Bernhard Rupp
001 (925) 209-7429
+43 (676) 571-0536
b...@ruppweb.org
hofkristall...@gmail.com
http://www.ruppweb.org/
---
The road to scientific serfdom is paved with Nature papers
---




Re: [ccp4bb] funding experiences - query

2015-04-14 Thread Anastassis Perrakis
Dear Bernhard,

I think you need to clarify the first question. “Denied funding’ means to me 
that a committee officially denied the proposal for these reasons, which is 
rare, as typically they are very careful, or at least that is my experience. 
However, its rather common that one of the referees uses any of these as a 
negative point during a review.

Most importantly though, I think that these days almost any grant that is 
purely based on determining structures will be denied by definition. Thus I 
doubt if the question as it is posed now warrants investigation … I think the 
time for ‘crystallographic studies’ has passed and almost all grants that 
include structural work are in the context of a wider scientific framework...

best 

Tassos

> Were you denied funding for a structure study because you did not have yet
> (a) large scale protein expression
> (b) first crystals
> (c) diffraction crystals
> (d) data
> (e) maps
> 
> Did you have to 'reverse engineer' an application, i.e. you had the
> structure already (almost) and 
> then write the grant?
> 
> Any other peculiarities/comments you received, and what you feel would need 
> improvement/should be addressed.
> 
> Again, any comments will be confidential and will contribute to raise
> awareness for the special
> requirements of, and funding for, the significant up-front work necessary
> for crystallographic studies.
> Get it off your soul and make the world a better place.
> 
> Thanks and best regards, BR
> -
> Bernhard Rupp
> 001 (925) 209-7429
> +43 (676) 571-0536
> b...@ruppweb.org
> hofkristall...@gmail.com
> http://www.ruppweb.org/
> ---
> The road to scientific serfdom is paved with Nature papers
> ---


[ccp4bb] funding experiences - query

2015-04-14 Thread Bernhard Rupp (Hofkristallrat a.D.)
Hi Fellows,

hopefully everyone has recovered from the Easter Egg coma & April jokes by
now.

Now something serious: for a commissioned opinion piece in a vanity journal,
I seek to
get a better understanding regarding improvement of review and funding
decisions for 
crystallographic studies.

Under assurance of full confidentiality, I would hope to hear from some of
you off board
comments/experiences on subjects/questions like those:   

Were you denied funding for a structure study because you did not have yet
(a) large scale protein expression
(b) first crystals
(c) diffraction crystals
(d) data
(e) maps

Did you have to 'reverse engineer' an application, i.e. you had the
structure already (almost) and 
then write the grant?

Any other peculiarities/comments you received, and what you feel would need 
improvement/should be addressed.

Again, any comments will be confidential and will contribute to raise
awareness for the special
requirements of, and funding for, the significant up-front work necessary
for crystallographic studies.
Get it off your soul and make the world a better place.

Thanks and best regards, BR
-
Bernhard Rupp
001 (925) 209-7429
+43 (676) 571-0536
b...@ruppweb.org
hofkristall...@gmail.com
http://www.ruppweb.org/
---
The road to scientific serfdom is paved with Nature papers
---