Jiamu,
That is a question for pymol-users, not ccp4bb:
http://sourceforge.net/mail/?group_id=4546
Cheers,
Warren
PS. here's one answer:
# create the objects
load $TUT/1hpv.pdb
create side1, chain A
create side2, chain B
dele 1hpv
# splay apart the interface
show surface, side1 within 5 of side2
show surface, side2 within 5 of side1
orient side1 side2
translate [-30, 0, 0], side1
translate [30, 0, 0], side2
rotate y, -60, side1, origin=side1
rotate y, 60, side2, origin=side2
zoom
-Original Message-
From: CCP4 bulletin board on behalf of Jiamu Du
Sent: Fri 8/7/2009 7:09 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] how to generate the figure of buried surface area
Dear all,
I am analyzing a complex structure and generate figure using the program
Pymol. Here I want to generate a figure to show the buried surface area. How
to generate this type figrues?
Thanks and best wishes.
--
Jiamu Du, Ph.D.
State Key Laboratory of Molecular Biology
Institute of Biochemistry and Cell Biology
Shanghai Institutes for Biological Sciences
Chinese Academy of Sciences
320 Yue-Yang Road
Shanghai 200031
P. R. China
Tel: +86-21-5492-1117
E-mail: jiam...@gmail.com