Re: [ccp4bb] poly-dN model
Hi Reza, If you are looking for a molecular replacement model, we typically use single-stranded or double-stranded poly-uridine, which you can generate with Coot. Best, -Jinwei - Jinwei Zhang Laboratory of Molecular Biology NIDDK, NIH 50 South Drive, Room 4503 Bethesda, MD 20892 Tel: 301-402-4703 https://www-mslmb.niddk.nih.gov/zhang/zhanglab.html To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
Re: [ccp4bb] poly-dN model
Thank you Robbie. Reza Khayat, PhD Associate Professor City College of New York Department of Chemistry and Biochemistry New York, NY 10031 From: CCP4 bulletin board on behalf of Robbie Joosten Sent: Saturday, March 13, 2021 9:09 AM To: CCP4BB@JISCMAIL.AC.UK Subject: [EXTERNAL] Re: [ccp4bb] poly-dN model Hi Reza, The equivalent for UNK (not ALA!) is residue N for RNA and DN for DNA. HTH, Robbie > -Original Message- > From: CCP4 bulletin board On Behalf Of Reza > Khayat > Sent: Saturday, March 13, 2021 14:53 > To: CCP4BB@JISCMAIL.AC.UK > Subject: [ccp4bb] poly-dN model > > Hi, > > > > > > For DNA/RNA models, is there an equivalent to a poly-Ala model? Something > like a poly-dN perhaps? This is in case you don't know the nucleic acid > sequence. Thanks. > > > > > > Best wishes, > Reza > > > > > > Reza Khayat, PhD > Associate Professor > City College of New York > Department of Chemistry and Biochemistry New York, NY 10031 > > > > > To unsubscribe from the CCP4BB list, click the following link: > https://urldefense.proofpoint.com/v2/url?u=https-3A__www.jiscmail.ac.uk_cgi-2Dbin_WA-2DJISC.exe-3FSUBED1-3DCCP4BB-26A-3D1=DwIGaQ=4NmamNZG3KTnUCoC6InoLJ6KV1tbVKrkZXHRwtIMGmo=1DzJFW0v6TgEhkW1gy_-ke-RbtvS1fzEbD5_hcb9Up0=jP6HDKxD5RlWskxkP4QQ4gmsZNphy1wpBGr8ogjX3f8=ee0nelENaAX352oON3RQzo-RZ-WUVEMnFbymYWR5AdY= To unsubscribe from the CCP4BB list, click the following link: https://urldefense.proofpoint.com/v2/url?u=https-3A__www.jiscmail.ac.uk_cgi-2Dbin_WA-2DJISC.exe-3FSUBED1-3DCCP4BB-26A-3D1=DwIGaQ=4NmamNZG3KTnUCoC6InoLJ6KV1tbVKrkZXHRwtIMGmo=1DzJFW0v6TgEhkW1gy_-ke-RbtvS1fzEbD5_hcb9Up0=jP6HDKxD5RlWskxkP4QQ4gmsZNphy1wpBGr8ogjX3f8=ee0nelENaAX352oON3RQzo-RZ-WUVEMnFbymYWR5AdY= This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://urldefense.proofpoint.com/v2/url?u=https-3A__www.jiscmail.ac.uk_policyandsecurity_=DwIGaQ=4NmamNZG3KTnUCoC6InoLJ6KV1tbVKrkZXHRwtIMGmo=1DzJFW0v6TgEhkW1gy_-ke-RbtvS1fzEbD5_hcb9Up0=jP6HDKxD5RlWskxkP4QQ4gmsZNphy1wpBGr8ogjX3f8=wv3t79UCM1fJGcGvJW6PLhNDjEtD5UaGyoQ1UIdZXcY= To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
Re: [ccp4bb] poly-dN model
Hi Reza, The equivalent for UNK (not ALA!) is residue N for RNA and DN for DNA. HTH, Robbie > -Original Message- > From: CCP4 bulletin board On Behalf Of Reza > Khayat > Sent: Saturday, March 13, 2021 14:53 > To: CCP4BB@JISCMAIL.AC.UK > Subject: [ccp4bb] poly-dN model > > Hi, > > > > > > For DNA/RNA models, is there an equivalent to a poly-Ala model? Something > like a poly-dN perhaps? This is in case you don't know the nucleic acid > sequence. Thanks. > > > > > > Best wishes, > Reza > > > > > > Reza Khayat, PhD > Associate Professor > City College of New York > Department of Chemistry and Biochemistry New York, NY 10031 > > > > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
[ccp4bb] poly-dN model
Hi, For DNA/RNA models, is there an equivalent to a poly-Ala model? Something like a poly-dN perhaps? This is in case you don't know the nucleic acid sequence. Thanks. Best wishes, Reza Reza Khayat, PhD Associate Professor City College of New York Department of Chemistry and Biochemistry New York, NY 10031 To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
