Re: [ccp4bb] problems with ccp4-6.4.0 occurrences in ccp4-6.5
Hi there,
Following your kind suggestions, logging out and logging in again solved
the problem. Thanks !
Fred.
On 23/01/15 18:07, vellieux wrote:
Hello,
I just installed ccp4-6.5
I get an error at run time (relating to $PATH I suppose, see below)
that still contains occurrences of ccp4-6.4.0 even though the line
that was supposed to get rid of these was made active in ccp4.setup-csh
# To remove previously added CCP4 directories from the PATH, uncomment:
if $?CCP4 setenv PATH `echo "$PATH" | sed "s,${CCP4}[^:]*:,,g"`
The previous distribution of ccp4 (6.4.0) was removed during the 6.5
installation step. I get this for example when launching ccp4i:
Error in startup script: couldn't read file
"/home/prog/ccp4-6.4.0/share/dbccp4i/ClientAPI/dbClientAPI.tcl": no
such file or directory
while executing
"source [FileJoin [GetEnvPath DBCCP4I_TOP] ClientAPI dbClientAPI.tcl]"
(file "/home/prog/ccp4-6.5/share/ccp4i/src/projectdirs.tcl" line 23)
invoked from within
"source [SearchPath TOP src projectdirs.tcl]"
(file "/home/prog/ccp4-6.5/share/ccp4i/src/system.tcl" line 3379)
invoked from within
"source [file join $env(CCP4I_TOP) src system.tcl]"
(file "/home/prog/ccp4-6.5/share/ccp4i/bin/ccp4i.tcl" line 79)
invoked from within
"source [file join $env(CCP4I_TOP) bin ccp4i.tcl]"
(file "/home/prog/ccp4-6.5/bin/ccp4i" line 12)
and echo $PATH contains the following entry that shouldn't be there:
/home/prog/ccp4-6.4.0/share/xia2/Applications
Would anyone know how to deal with this ?
Thank you in advance,
Fred.
--
Fred. Vellieux (B.Sc., Ph.D., hdr)
IBS / ELMA
Campus EPN
71 avenue des Martyrs
CS 10090
F-38044 Grenoble Cedex 9
Tel: +33 457428605
Fax: +33 476501890
Re: [ccp4bb] problems with ccp4-6.4.0 occurrences in ccp4-6.5
Hi Fred,
I had about the same problem that disappeared when I logged out and in
again - just a new terminal was no help. Does that help in your case,
too? Maybe there is an environment variable that gets appended by the
setup script.
Best,
Tim
On 01/23/2015 06:07 PM, vellieux wrote:
> Hello,
>
> I just installed ccp4-6.5
>
> I get an error at run time (relating to $PATH I suppose, see below) that
> still contains occurrences of ccp4-6.4.0 even though the line that was
> supposed to get rid of these was made active in ccp4.setup-csh
> # To remove previously added CCP4 directories from the PATH, uncomment:
> if $?CCP4 setenv PATH `echo "$PATH" | sed "s,${CCP4}[^:]*:,,g"`
>
> The previous distribution of ccp4 (6.4.0) was removed during the 6.5
> installation step. I get this for example when launching ccp4i:
>
> Error in startup script: couldn't read file
> "/home/prog/ccp4-6.4.0/share/dbccp4i/ClientAPI/dbClientAPI.tcl": no such
> file or directory
> while executing
> "source [FileJoin [GetEnvPath DBCCP4I_TOP] ClientAPI dbClientAPI.tcl]"
> (file "/home/prog/ccp4-6.5/share/ccp4i/src/projectdirs.tcl" line 23)
> invoked from within
> "source [SearchPath TOP src projectdirs.tcl]"
> (file "/home/prog/ccp4-6.5/share/ccp4i/src/system.tcl" line 3379)
> invoked from within
> "source [file join $env(CCP4I_TOP) src system.tcl]"
> (file "/home/prog/ccp4-6.5/share/ccp4i/bin/ccp4i.tcl" line 79)
> invoked from within
> "source [file join $env(CCP4I_TOP) bin ccp4i.tcl]"
> (file "/home/prog/ccp4-6.5/bin/ccp4i" line 12)
>
> and echo $PATH contains the following entry that shouldn't be there:
> /home/prog/ccp4-6.4.0/share/xia2/Applications
>
> Would anyone know how to deal with this ?
>
> Thank you in advance,
>
> Fred.
>
--
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
signature.asc
Description: OpenPGP digital signature
[ccp4bb] problems with ccp4-6.4.0 occurrences in ccp4-6.5
Hello,
I just installed ccp4-6.5
I get an error at run time (relating to $PATH I suppose, see below) that
still contains occurrences of ccp4-6.4.0 even though the line that was
supposed to get rid of these was made active in ccp4.setup-csh
# To remove previously added CCP4 directories from the PATH, uncomment:
if $?CCP4 setenv PATH `echo "$PATH" | sed "s,${CCP4}[^:]*:,,g"`
The previous distribution of ccp4 (6.4.0) was removed during the 6.5
installation step. I get this for example when launching ccp4i:
Error in startup script: couldn't read file
"/home/prog/ccp4-6.4.0/share/dbccp4i/ClientAPI/dbClientAPI.tcl": no such
file or directory
while executing
"source [FileJoin [GetEnvPath DBCCP4I_TOP] ClientAPI dbClientAPI.tcl]"
(file "/home/prog/ccp4-6.5/share/ccp4i/src/projectdirs.tcl" line 23)
invoked from within
"source [SearchPath TOP src projectdirs.tcl]"
(file "/home/prog/ccp4-6.5/share/ccp4i/src/system.tcl" line 3379)
invoked from within
"source [file join $env(CCP4I_TOP) src system.tcl]"
(file "/home/prog/ccp4-6.5/share/ccp4i/bin/ccp4i.tcl" line 79)
invoked from within
"source [file join $env(CCP4I_TOP) bin ccp4i.tcl]"
(file "/home/prog/ccp4-6.5/bin/ccp4i" line 12)
and echo $PATH contains the following entry that shouldn't be there:
/home/prog/ccp4-6.4.0/share/xia2/Applications
Would anyone know how to deal with this ?
Thank you in advance,
Fred.
--
Fred. Vellieux (B.Sc., Ph.D., hdr)
IBS / ELMA
Campus EPN
71 avenue des Martyrs
CS 10090
F-38044 Grenoble Cedex 9
Tel: +33 457428605
Fax: +33 476501890
