Thomas,
The Areaimol program within the CCP4 suite should do what you're looking
for: http://www.ccp4.ac.uk/html/areaimol.html Although its a calculation of
surface accessability, you can delete sections of your protein to get at the
buried area between two sections of your protein.
Cheers, Jim
On Fri, Mar 20, 2009 at 2:48 PM, Jhon Thomas jhon1.tho...@gmail.com wrote:
Hello all
can any one suggest any server or tool which can calculate the burried
surface area between the domains of the same monomer? PISA calculates the
interfacial surace area between the monomer or oligomer. Can areamol
calculate it?
Thanks in advance
Thomas
--
Jim Fairman
Graduate Research Assistant
Department of Biochemistry, Cellular, and Molecular Biology (BCMB)
University of Tennessee -- Knoxville
216-368-3337 jfair...@utk.edu james.fair...@case.edu
