Re: [ccp4bb] technical question
You could probably do this via a mutate option in coot . Or at least use the sulfoxide as a new residue (not mutate) From: CCP4 bulletin board On Behalf Of amit gaur Sent: Saturday, 30 November 2019 7:06 AM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] technical question Hi everbody, I want to replace a particular methionine in a pdb with methionine sulfoxide( an oxidized form of methionine). Can body please tell me how to do this? I am familiar with pymol, chimera and coot software. -- Amit Gaur Post Doctoral Researcher Thomas Jefferson University 1020, Locust Street, Suite 418 Philadelphia, PA 19107 To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB=1<https://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.jiscmail.ac.uk%2Fcgi-bin%2Fwebadmin%3FSUBED1%3DCCP4BB%26A%3D1=02%7C01%7Cjoel.tyndall%40OTAGO.AC.NZ%7Cd0a15b5518454b51214f08d774f84574%7C0225efc578fe4928b1579ef24809e9ba%7C1%7C1%7C637106482037897929=KfHAu9d5Q%2B%2FSc3lI8iEgXFKqWvLctveMcCulDkpjMZQ%3D=0> To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB=1
Re: [ccp4bb] technical question
Thanks every one. I tried this and worked pretty well. On Fri, Nov 29, 2019 at 4:42 PM Robbie Joosten wrote: > Or use the residue name MHO if SME has the wrong hand around the sulfur. > > Cheers, > Robbie > > On 29 Nov 2019 21:47, Paul Emsley wrote: > > On 29/11/2019 18:06, amit gaur wrote: > > > I want to replace a particular methionine in a pdbwith methionine > sulfoxide( an oxidized form of > > methionine). Can body please tell me how to do this? I am familiar with > pymol, chimera and coot software. > > In Coot: > > Extensions -> Modelling -> Replace Residue -> SME -> Mutate > > > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB=1 > > > > -- > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB=1 > -- *Dr. Amit Gaur* *Post Doctoral ResearcherPI: Dr. Ji-Fang ZhangThomas Jefferson University* *1020, Locust Street, Suite 418* *Philadelphia, PA 19107* To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB=1
Re: [ccp4bb] technical question
Or use the residue name MHO if SME has the wrong hand around the sulfur. Cheers, Robbie On 29 Nov 2019 21:47, Paul Emsley wrote: On 29/11/2019 18:06, amit gaur wrote: > I want to replace a particular methionine in a pdbwith methionine sulfoxide( > an oxidized form of > methionine). Can body please tell me how to do this? I am familiar with > pymol, chimera and coot software. In Coot: Extensions -> Modelling -> Replace Residue -> SME -> Mutate To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB=1 To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB=1
Re: [ccp4bb] technical question
On 29/11/2019 18:06, amit gaur wrote: I want to replace a particular methionine in a pdbwith methionine sulfoxide( an oxidized form of methionine). Can body please tell me how to do this? I am familiar with pymol, chimera and coot software. In Coot: Extensions -> Modelling -> Replace Residue -> SME -> Mutate To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB=1
[ccp4bb] technical question
Hi everbody, I want to replace a particular methionine in a pdb with methionine sulfoxide( an oxidized form of methionine). Can body please tell me how to do this? I am familiar with pymol, chimera and coot software. -- *Amit Gaur* *Post Doctoral ResearcherThomas Jefferson University* *1020, Locust Street, Suite 418* *Philadelphia, PA 19107* To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB=1
