Re: [ccp4bb] Fwd: Could Biological Negative Results be published?

2011-07-11 Thread Bosch, Juergen
http://www.jnrbm.com/

Might this be what you are looking for ?

Jürgen

..
Jürgen Bosch
Johns Hopkins Bloomberg School of Public Health
Department of Biochemistry  Molecular Biology
Johns Hopkins Malaria Research Institute
615 North Wolfe Street, W8708
Baltimore, MD 21205
Phone: +1-410-614-4742
Lab:  +1-410-614-4894
Fax:  +1-410-955-3655
http://web.mac.com/bosch_lab/

On Jul 11, 2011, at 6:03 AM, F.Xavier Gomis-Rüth wrote:

Dear CCP4ers,
I think this is a very interesting initiative and it could potentially lead to 
a discussion within the board.
Best,
Xavier



 Mensaje original 
Asunto: Could Biological Negative Results be published?
Fecha:  Sun, 10 Jul 2011 21:39:52 -0500
De: David Alcantara 
listmas...@mail.arjournals.commailto:listmas...@mail.arjournals.com
Para:   f...@ibmb.csic.esmailto:f...@ibmb.csic.es



 Dear colleague,

As you are well aware it is common in our field that many of our
endeavors do not lead to the results we want or expect. Numerous tests
and experiments have outcomes that we share with our immediate
colleagues during informal meetings, but that we are not considering
material for publication. As a result a wealth of information is never
brought to the attention of the greater public, which is not only
unfortunate, but also has others repeating similar studies to produce
the same negative results. Not only are a lot of resources like time
and money wasted in this way, but it also leads to frustration that
could have been prevented if only the scientists would have been aware
of the negative results of earlier studies.

My name is David Alcantara and, on behalf of our editorial board,
I’d like to invite you to submit your articles to The All Results
Journals: Biology, a new journal that focuses on publishing the grey
literature that has never been published. It is our goal to compile
and publish those experiments that led to negative results or to
outcomes that were not expected and were not before considered for
publication. We of The All Results Journals feel that it is equally
important to publish these results together with interpretations of
the scientists involved and in this way offer a solution to the
problem that publication bias is causing, because of a strong emphasis
on positive results.

The All Results Journals:Biol is a peer-reviewed journal dedicated to
publishing articles with negative results and outcomes that were not
expected and were not before considered for publication in all areas
of Biology (pure and applied). The Journal is TOTAL Open Access (no
fees to publish and read) and is being indexed by well-known
scientific databases such as Web of Knowledge, Scirus, and Pubmed This
will assure maximum exposure of your articles.

We expect to publish articles within four to six weeks of submission,
and our award-winning OJS Publications Web Editions Platform will
showcase your important findings to the international scientific
community.

Please check our info for authors to submit your articles at:

http://www.arjournals.com/ojs/index.php?journal=Biolpage=informationop=authors
http://arjournals.com/ojs/index.php?journal=Biolpage=informationop=authorshttp://arjournals.com/ojs/index.php?journal=Biolpage=informationop=authors

Thank you very much for your time and we look forward to hearing from
you..

With kind regards,

David Alcantara

--
David Alcantara, Ph.D
Managing Editor
alcant...@arjournals.commailto:alcant...@arjournals.com
Phone: 001 617 575 9152
The All Results Journals:Biol (ISSN: 2172-4784)
http://www.arjournals.com/ojs/index.php?journal=Biol
Follow us on
http://www.facebook.com/pages/The-All-Results-Journals/53410901726
---

This e-mail is from The All Results Journals. The e-mail and any files
transmitted with it are confidential and intended solely for the use
of the individual or entity to whom they are addressed. Any
unauthorized dissemination or copying of this e-mail or its
attachments, and any use or disclosure of any information contained in
them, is strictly prohibited and may be illegal. If you have received
this e-mail in error, please notify or telephone and delete it from
your system.

--
If you do not want to receive any more e-mails from us visit,
http://mail.arjournals.com/?p=unsubscribeuid=7f58f771c3b6364a657dc5f086f8962f




--
Powered by PHPlist, www.phplist.comhttp://www.phplist.com/ --








Re: [ccp4bb] Fwd: Could Biological Negative Results be published?

2011-07-11 Thread Partha Chakrabarti
What if the negative results contradict some recent papers in big journals?
Would the PI risk his / her contacts  connections? Of course for the PhD
student or postdoc, it matters a lot to get it 'published'..



On Mon, Jul 11, 2011 at 4:27 PM, Bosch, Juergen jubo...@jhsph.edu wrote:

 http://www.jnrbm.com/

 Might this be what you are looking for ?

 Jürgen

 ..
 Jürgen Bosch
 Johns Hopkins Bloomberg School of Public Health
 Department of Biochemistry  Molecular Biology
 Johns Hopkins Malaria Research Institute
 615 North Wolfe Street, W8708
 Baltimore, MD 21205
 Phone: +1-410-614-4742
 Lab:  +1-410-614-4894
 Fax:  +1-410-955-3655
 http://web.mac.com/bosch_lab/

 On Jul 11, 2011, at 6:03 AM, F.Xavier Gomis-Rüth wrote:

  Dear CCP4ers,
 I think this is a very interesting initiative and it could potentially lead
 to a discussion within the board.
 Best,
 Xavier



  Mensaje original   Asunto: Could Biological Negative
 Results be published?  Fecha: Sun, 10 Jul 2011 21:39:52 -0500  De: David
 Alcantara listmas...@mail.arjournals.comlistmas...@mail.arjournals.com  
 Para:
 f...@ibmb.csic.es

  Dear colleague,

 As you are well aware it is common in our field that many of our
 endeavors do not lead to the results we want or expect. Numerous tests
 and experiments have outcomes that we share with our immediate
 colleagues during informal meetings, but that we are not considering
 material for publication. As a result a wealth of information is never
 brought to the attention of the greater public, which is not only
 unfortunate, but also has others repeating similar studies to produce
 the same negative results. Not only are a lot of resources like time
 and money wasted in this way, but it also leads to frustration that
 could have been prevented if only the scientists would have been aware
 of the negative results of earlier studies.

 My name is David Alcantara and, on behalf of our editorial board,
 I’d like to invite you to submit your articles to The All Results
 Journals: Biology, a new journal that focuses on publishing the grey
 literature that has never been published. It is our goal to compile
 and publish those experiments that led to negative results or to
 outcomes that were not expected and were not before considered for
 publication. We of The All Results Journals feel that it is equally
 important to publish these results together with interpretations of
 the scientists involved and in this way offer a solution to the
 problem that publication bias is causing, because of a strong emphasis
 on positive results.

 The All Results Journals:Biol is a peer-reviewed journal dedicated to
 publishing articles with negative results and outcomes that were not
 expected and were not before considered for publication in all areas
 of Biology (pure and applied). The Journal is TOTAL Open Access (no
 fees to publish and read) and is being indexed by well-known
 scientific databases such as Web of Knowledge, Scirus, and Pubmed This
 will assure maximum exposure of your articles.

 We expect to publish articles within four to six weeks of submission,
 and our award-winning OJS Publications Web Editions Platform will
 showcase your important findings to the international scientific
 community.

 Please check our info for authors to submit your articles at:
 http://www.arjournals.com/ojs/index.php?journal=Biolpage=informationop=authorshttp://arjournals.com/ojs/index.php?journal=Biolpage=informationop=authors
  
 http://arjournals.com/ojs/index.php?journal=Biolpage=informationop=authors

 Thank you very much for your time and we look forward to hearing from
 you..

 With kind regards,

 David Alcantara

 --
 David Alcantara, Ph.D
 Managing editoralcant...@arjournals.com
 Phone: 001 617 575 9152
 The All Results Journals:Biol (ISSN: 
 2172-4784)http://www.arjournals.com/ojs/index.php?journal=Biol
 Follow us onhttp://www.facebook.com/pages/The-All-Results-Journals/53410901726
 ---

 This e-mail is from The All Results Journals. The e-mail and any files
 transmitted with it are confidential and intended solely for the use
 of the individual or entity to whom they are addressed. Any
 unauthorized dissemination or copying of this e-mail or its
 attachments, and any use or disclosure of any information contained in
 them, is strictly prohibited and may be illegal. If you have received
 this e-mail in error, please notify or telephone and delete it from
 your system.

 --
 If you do not want to receive any more e-mails from us visit, 
 http://mail.arjournals.com/?p=unsubscribeuid=7f58f771c3b6364a657dc5f086f8962f




 --
 Powered by PHPlist, www.phplist.com --




Re: [ccp4bb] Fwd: Could Biological Negative Results be published?

2011-07-11 Thread Tim Gruene
On Mon, Jul 11, 2011 at 04:35:31PM +0530, Partha Chakrabarti wrote:
 What if the negative results contradict some recent papers in big journals?

In that case it is certainly not a negative result and I am actually surprised
someone even comes up with the idea of not publishing a result just for lip
service. A good scientist is happy to deal with criticism of his or her
results - if they would not get criticised, they would not have been worth
publishing.

Cheers, Tim

 Would the PI risk his / her contacts  connections? Of course for the PhD
 student or postdoc, it matters a lot to get it 'published'..
 
 
 
 On Mon, Jul 11, 2011 at 4:27 PM, Bosch, Juergen jubo...@jhsph.edu wrote:
 
  http://www.jnrbm.com/
 
  Might this be what you are looking for ?
 
  Jürgen
 
  ..
  Jürgen Bosch
  Johns Hopkins Bloomberg School of Public Health
  Department of Biochemistry  Molecular Biology
  Johns Hopkins Malaria Research Institute
  615 North Wolfe Street, W8708
  Baltimore, MD 21205
  Phone: +1-410-614-4742
  Lab:  +1-410-614-4894
  Fax:  +1-410-955-3655
  http://web.mac.com/bosch_lab/
 
  On Jul 11, 2011, at 6:03 AM, F.Xavier Gomis-Rüth wrote:
 
   Dear CCP4ers,
  I think this is a very interesting initiative and it could potentially lead
  to a discussion within the board.
  Best,
  Xavier
 
 
 
   Mensaje original   Asunto: Could Biological Negative
  Results be published?  Fecha: Sun, 10 Jul 2011 21:39:52 -0500  De: David
  Alcantara listmas...@mail.arjournals.comlistmas...@mail.arjournals.com  
  Para:
  f...@ibmb.csic.es
 
   Dear colleague,
 
  As you are well aware it is common in our field that many of our
  endeavors do not lead to the results we want or expect. Numerous tests
  and experiments have outcomes that we share with our immediate
  colleagues during informal meetings, but that we are not considering
  material for publication. As a result a wealth of information is never
  brought to the attention of the greater public, which is not only
  unfortunate, but also has others repeating similar studies to produce
  the same negative results. Not only are a lot of resources like time
  and money wasted in this way, but it also leads to frustration that
  could have been prevented if only the scientists would have been aware
  of the negative results of earlier studies.
 
  My name is David Alcantara and, on behalf of our editorial board,
  I’d like to invite you to submit your articles to The All Results
  Journals: Biology, a new journal that focuses on publishing the grey
  literature that has never been published. It is our goal to compile
  and publish those experiments that led to negative results or to
  outcomes that were not expected and were not before considered for
  publication. We of The All Results Journals feel that it is equally
  important to publish these results together with interpretations of
  the scientists involved and in this way offer a solution to the
  problem that publication bias is causing, because of a strong emphasis
  on positive results.
 
  The All Results Journals:Biol is a peer-reviewed journal dedicated to
  publishing articles with negative results and outcomes that were not
  expected and were not before considered for publication in all areas
  of Biology (pure and applied). The Journal is TOTAL Open Access (no
  fees to publish and read) and is being indexed by well-known
  scientific databases such as Web of Knowledge, Scirus, and Pubmed This
  will assure maximum exposure of your articles.
 
  We expect to publish articles within four to six weeks of submission,
  and our award-winning OJS Publications Web Editions Platform will
  showcase your important findings to the international scientific
  community.
 
  Please check our info for authors to submit your articles at:
  http://www.arjournals.com/ojs/index.php?journal=Biolpage=informationop=authorshttp://arjournals.com/ojs/index.php?journal=Biolpage=informationop=authors
   
  http://arjournals.com/ojs/index.php?journal=Biolpage=informationop=authors
 
  Thank you very much for your time and we look forward to hearing from
  you..
 
  With kind regards,
 
  David Alcantara
 
  --
  David Alcantara, Ph.D
  Managing editoralcant...@arjournals.com
  Phone: 001 617 575 9152
  The All Results Journals:Biol (ISSN: 
  2172-4784)http://www.arjournals.com/ojs/index.php?journal=Biol
  Follow us 
  onhttp://www.facebook.com/pages/The-All-Results-Journals/53410901726
  ---
 
  This e-mail is from The All Results Journals. The e-mail and any files
  transmitted with it are confidential and intended solely for the use
  of the individual or entity to whom they are addressed. Any
  unauthorized dissemination or copying of this e-mail or its
  attachments, and any use or disclosure of any information contained in
  them, is strictly prohibited and may be illegal. If you have received
  this e-mail in error, please notify or telephone 

Re: [ccp4bb] Fwd: Could Biological Negative Results be published?

2011-07-11 Thread Victor Bolanos-Garcia
Dear David

 

In addition to what Partha and Tim have just said, what if the negative
results are simply due to poor experimental skills and/or lack of attention
to detail?. I guess my question is would a journal that publishes negative
results be rapidly populated with junk data?. 

 

Kind regards

 

  Victor 

 

 

 

 

From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Partha
Chakrabarti
Sent: 11 July 2011 12:06
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] Fwd: Could Biological Negative Results be published?

 

What if the negative results contradict some recent papers in big journals?
Would the PI risk his / her contacts  connections? Of course for the PhD
student or postdoc, it matters a lot to get it 'published'..

 

 

On Mon, Jul 11, 2011 at 4:27 PM, Bosch, Juergen jubo...@jhsph.edu wrote:

http://www.jnrbm.com/

 

Might this be what you are looking for ?

 

Jürgen

 

..

Jürgen Bosch

Johns Hopkins Bloomberg School of Public Health

Department of Biochemistry  Molecular Biology

Johns Hopkins Malaria Research Institute

615 North Wolfe Street, W8708

Baltimore, MD 21205

Phone: +1-410-614-4742

Lab:  +1-410-614-4894

Fax:  +1-410-955-3655

http://web.mac.com/bosch_lab/

 

On Jul 11, 2011, at 6:03 AM, F.Xavier Gomis-Rüth wrote:





Dear CCP4ers,
I think this is a very interesting initiative and it could potentially lead
to a discussion within the board.
Best,
Xavier



 Mensaje original  


Asunto: 

Could Biological Negative Results be published?


Fecha: 

Sun, 10 Jul 2011 21:39:52 -0500


De: 

David Alcantara  mailto:listmas...@mail.arjournals.com
listmas...@mail.arjournals.com


Para: 

f...@ibmb.csic.es

 

 Dear colleague,
 
As you are well aware it is common in our field that many of our
endeavors do not lead to the results we want or expect. Numerous tests
and experiments have outcomes that we share with our immediate
colleagues during informal meetings, but that we are not considering
material for publication. As a result a wealth of information is never
brought to the attention of the greater public, which is not only
unfortunate, but also has others repeating similar studies to produce
the same negative results. Not only are a lot of resources like time
and money wasted in this way, but it also leads to frustration that
could have been prevented if only the scientists would have been aware
of the negative results of earlier studies. 
 
My name is David Alcantara and, on behalf of our editorial board,
I’d like to invite you to submit your articles to The All Results
Journals: Biology, a new journal that focuses on publishing the grey
literature that has never been published. It is our goal to compile
and publish those experiments that led to negative results or to
outcomes that were not expected and were not before considered for
publication. We of The All Results Journals feel that it is equally
important to publish these results together with interpretations of
the scientists involved and in this way offer a solution to the
problem that publication bias is causing, because of a strong emphasis
on positive results.
 
The All Results Journals:Biol is a peer-reviewed journal dedicated to
publishing articles with negative results and outcomes that were not
expected and were not before considered for publication in all areas
of Biology (pure and applied). The Journal is TOTAL Open Access (no
fees to publish and read) and is being indexed by well-known
scientific databases such as Web of Knowledge, Scirus, and Pubmed This
will assure maximum exposure of your articles.
 
We expect to publish articles within four to six weeks of submission,
and our award-winning OJS Publications Web Editions Platform will
showcase your important findings to the international scientific
community.
 
Please check our info for authors to submit your articles at:
 
http://www.arjournals.com/ojs/index.php?journal=Biol
http://www.arjournals.com/ojs/index.php?journal=Biolpage=informationop=au
thors page=informationop=authors
 
http://arjournals.com/ojs/index.php?journal=Biolpage=informationop=author
s
http://arjournals.com/ojs/index.php?journal=Biolpage=informationop=author
s
 
Thank you very much for your time and we look forward to hearing from
you..
 
With kind regards,
 
 
 
 
 Alcantara
 
-- 
David Alcantara, Ph.D
Managing Editor
alcant...@arjournals.com
Phone: 001 617 575 9152
The All Results Journals:Biol (ISSN: 2172-4784)
http://www.arjournals.com/ojs/index.php?journal=Biol
Follow us on
http://www.facebook.com/pages/The-All-Results-Journals/53410901726
---
 
This e-mail is from The All Results Journals. The e-mail and any files
transmitted with it are confidential and intended solely for the use
of the individual or entity to whom they are addressed. Any
unauthorized dissemination or copying of this e-mail or its
attachments, and any use or disclosure of any information contained in
them, is strictly prohibited and may be illegal

Re: [ccp4bb] Fwd: Could Biological Negative Results be published?

2011-07-11 Thread Tim Gruene
Not if they are properly peer-reviewed as the ones mentioned within this thread
claim to be.
The prevention of junk is IMHO the main reason agains an all-open system as in
arxiv.org

Tim


On Mon, Jul 11, 2011 at 12:55:20PM +0100, Victor Bolanos-Garcia wrote:
 Dear David
 
  
 
 In addition to what Partha and Tim have just said, what if the negative
 results are simply due to poor experimental skills and/or lack of attention
 to detail?. I guess my question is would a journal that publishes negative
 results be rapidly populated with junk data?. 
 
  
 
 Kind regards
 
  
 
   Victor 
 
  
 
  
 
  
 
  
 
 From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Partha
 Chakrabarti
 Sent: 11 July 2011 12:06
 To: CCP4BB@JISCMAIL.AC.UK
 Subject: Re: [ccp4bb] Fwd: Could Biological Negative Results be published?
 
  
 
 What if the negative results contradict some recent papers in big journals?
 Would the PI risk his / her contacts  connections? Of course for the PhD
 student or postdoc, it matters a lot to get it 'published'..
 
  
 
  
 
 On Mon, Jul 11, 2011 at 4:27 PM, Bosch, Juergen jubo...@jhsph.edu wrote:
 
 http://www.jnrbm.com/
 
  
 
 Might this be what you are looking for ?
 
  
 
 Jürgen
 
  
 
 ..
 
 Jürgen Bosch
 
 Johns Hopkins Bloomberg School of Public Health
 
 Department of Biochemistry  Molecular Biology
 
 Johns Hopkins Malaria Research Institute
 
 615 North Wolfe Street, W8708
 
 Baltimore, MD 21205
 
 Phone: +1-410-614-4742
 
 Lab:  +1-410-614-4894
 
 Fax:  +1-410-955-3655
 
 http://web.mac.com/bosch_lab/
 
  
 
 On Jul 11, 2011, at 6:03 AM, F.Xavier Gomis-Rüth wrote:
 
 
 
 
 
 Dear CCP4ers,
 I think this is a very interesting initiative and it could potentially lead
 to a discussion within the board.
 Best,
 Xavier
 
 
 
  Mensaje original  
 
 
 Asunto: 
 
 Could Biological Negative Results be published?
 
 
 Fecha: 
 
 Sun, 10 Jul 2011 21:39:52 -0500
 
 
 De: 
 
 David Alcantara  mailto:listmas...@mail.arjournals.com
 listmas...@mail.arjournals.com
 
 
 Para: 
 
 f...@ibmb.csic.es
 
  
 
  Dear colleague,
  
 As you are well aware it is common in our field that many of our
 endeavors do not lead to the results we want or expect. Numerous tests
 and experiments have outcomes that we share with our immediate
 colleagues during informal meetings, but that we are not considering
 material for publication. As a result a wealth of information is never
 brought to the attention of the greater public, which is not only
 unfortunate, but also has others repeating similar studies to produce
 the same negative results. Not only are a lot of resources like time
 and money wasted in this way, but it also leads to frustration that
 could have been prevented if only the scientists would have been aware
 of the negative results of earlier studies. 
  
 My name is David Alcantara and, on behalf of our editorial board,
 I’d like to invite you to submit your articles to The All Results
 Journals: Biology, a new journal that focuses on publishing the grey
 literature that has never been published. It is our goal to compile
 and publish those experiments that led to negative results or to
 outcomes that were not expected and were not before considered for
 publication. We of The All Results Journals feel that it is equally
 important to publish these results together with interpretations of
 the scientists involved and in this way offer a solution to the
 problem that publication bias is causing, because of a strong emphasis
 on positive results.
  
 The All Results Journals:Biol is a peer-reviewed journal dedicated to
 publishing articles with negative results and outcomes that were not
 expected and were not before considered for publication in all areas
 of Biology (pure and applied). The Journal is TOTAL Open Access (no
 fees to publish and read) and is being indexed by well-known
 scientific databases such as Web of Knowledge, Scirus, and Pubmed This
 will assure maximum exposure of your articles.
  
 We expect to publish articles within four to six weeks of submission,
 and our award-winning OJS Publications Web Editions Platform will
 showcase your important findings to the international scientific
 community.
  
 Please check our info for authors to submit your articles at:
  
 http://www.arjournals.com/ojs/index.php?journal=Biol
 http://www.arjournals.com/ojs/index.php?journal=Biolpage=informationop=au
 thors page=informationop=authors
  
 http://arjournals.com/ojs/index.php?journal=Biolpage=informationop=author
 s
 http://arjournals.com/ojs/index.php?journal=Biolpage=informationop=author
 s
  
 Thank you very much for your time and we look forward to hearing from
 you..
  
 With kind regards,
  
  
  
  
  Alcantara
  
 -- 
 David Alcantara, Ph.D
 Managing Editor
 alcant...@arjournals.com
 Phone: 001 617 575 9152
 The All Results Journals:Biol (ISSN: 2172-4784)
 http://www.arjournals.com/ojs/index.php?journal=Biol
 Follow us on
 http

Re: [ccp4bb] Fwd: Could Biological Negative Results be published?

2011-07-11 Thread Van Den Berg, Bert
Just a comment: positive results can also be due to poor experimental skills 
and/or lack of attention to detail etc.
Peer review should take care of this, at least to some extent. Negative results 
can be very valuable.

Bert

From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] On Behalf Of Victor 
Bolanos-Garcia [vic...@cryst.bioc.cam.ac.uk]
Sent: Monday, July 11, 2011 7:55 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] Fwd: Could Biological Negative Results be published?

Dear David

In addition to what Partha and Tim have just said, what if the negative results 
are simply due to poor experimental skills and/or lack of attention to detail?. 
I guess my question is would a journal that publishes negative results be 
rapidly populated with junk data?.

Kind regards

  Victor




From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Partha 
Chakrabarti
Sent: 11 July 2011 12:06
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] Fwd: Could Biological Negative Results be published?

What if the negative results contradict some recent papers in big journals? 
Would the PI risk his / her contacts  connections? Of course for the PhD 
student or postdoc, it matters a lot to get it 'published'..


On Mon, Jul 11, 2011 at 4:27 PM, Bosch, Juergen 
jubo...@jhsph.edumailto:jubo...@jhsph.edu wrote:
http://www.jnrbm.com/

Might this be what you are looking for ?

Jürgen

..
Jürgen Bosch
Johns Hopkins Bloomberg School of Public Health
Department of Biochemistry  Molecular Biology
Johns Hopkins Malaria Research Institute
615 North Wolfe Street, W8708
Baltimore, MD 21205
Phone: +1-410-614-4742
Lab:  +1-410-614-4894
Fax:  +1-410-955-3655
http://web.mac.com/bosch_lab/

On Jul 11, 2011, at 6:03 AM, F.Xavier Gomis-Rüth wrote:


Dear CCP4ers,
I think this is a very interesting initiative and it could potentially lead to 
a discussion within the board.
Best,
Xavier



 Mensaje original 
Asunto:

Could Biological Negative Results be published?

Fecha:

Sun, 10 Jul 2011 21:39:52 -0500

De:

David Alcantara 
listmas...@mail.arjournals.commailto:listmas...@mail.arjournals.com

Para:

f...@ibmb.csic.esmailto:f...@ibmb.csic.es



 Dear colleague,



As you are well aware it is common in our field that many of our

endeavors do not lead to the results we want or expect. Numerous tests

and experiments have outcomes that we share with our immediate

colleagues during informal meetings, but that we are not considering

material for publication. As a result a wealth of information is never

brought to the attention of the greater public, which is not only

unfortunate, but also has others repeating similar studies to produce

the same negative results. Not only are a lot of resources like time

and money wasted in this way, but it also leads to frustration that

could have been prevented if only the scientists would have been aware

of the negative results of earlier studies.



My name is David Alcantara and, on behalf of our editorial board,

I’d like to invite you to submit your articles to The All Results

Journals: Biology, a new journal that focuses on publishing the grey

literature that has never been published. It is our goal to compile

and publish those experiments that led to negative results or to

outcomes that were not expected and were not before considered for

publication. We of The All Results Journals feel that it is equally

important to publish these results together with interpretations of

the scientists involved and in this way offer a solution to the

problem that publication bias is causing, because of a strong emphasis

on positive results.



The All Results Journals:Biol is a peer-reviewed journal dedicated to

publishing articles with negative results and outcomes that were not

expected and were not before considered for publication in all areas

of Biology (pure and applied). The Journal is TOTAL Open Access (no

fees to publish and read) and is being indexed by well-known

scientific databases such as Web of Knowledge, Scirus, and Pubmed This

will assure maximum exposure of your articles.



We expect to publish articles within four to six weeks of submission,

and our award-winning OJS Publications Web Editions Platform will

showcase your important findings to the international scientific

community.



Please check our info for authors to submit your articles at:



http://www.arjournals.com/ojs/index.php?journal=Biolpage=informationop=authors

http://arjournals.com/ojs/index.php?journal=Biolpage=informationop=authorshttp://arjournals.com/ojs/index.php?journal=Biolpage=informationop=authors



Thank you very much for your time and we look forward to hearing from

you..



With kind regards,









 Alcantara



--

David Alcantara, Ph.D

Managing Editor

alcant...@arjournals.commailto:alcant...@arjournals.com

Phone: 001 617 575 9152

The All Results Journals:Biol (ISSN: 2172-4784)

http

Re: [ccp4bb] Fwd: Could Biological Negative Results be published?

2011-07-11 Thread Bernhard Rupp
Hmmm...I probably have a bit of experience in this business of 'negative
results'.
Let me just say that it definitely has negative impact on your career when
you criticize colleagues.
It is extremely difficult to cut through the 'defendant's' and editorial
denial. In my experience
a lot of lip service is paid to the modern viewpoint of the scientific
method which Tim optimistically voices,
but alas, we live in a real world of postmodern relativism and subjective
interest, and reality looks different.

For those attending the IUCr meeting (shameless advert to follow), I have
changed the title of my
talk in the validation MS to
Transgressing Conventional Boundaries: Postmodern Structural Biology.

The absence of the word 'crystallography' in the title is not a coincidence.

Cheers, BR


On Mon, Jul 11, 2011 at 4:31 AM, Tim Gruene t...@shelx.uni-ac.gwdg.de wrote:

 On Mon, Jul 11, 2011 at 04:35:31PM +0530, Partha Chakrabarti wrote:
  What if the negative results contradict some recent papers in big
 journals?

 In that case it is certainly not a negative result and I am actually
 surprised
 someone even comes up with the idea of not publishing a result just for lip
 service. A good scientist is happy to deal with criticism of his or her
 results - if they would not get criticised, they would not have been worth
 publishing.

 Cheers, Tim

  Would the PI risk his / her contacts  connections? Of course for the PhD
  student or postdoc, it matters a lot to get it 'published'..
 
 
 
  On Mon, Jul 11, 2011 at 4:27 PM, Bosch, Juergen jubo...@jhsph.edu
 wrote:
 
   http://www.jnrbm.com/
  
   Might this be what you are looking for ?
  
   Jürgen
  
   ..
   Jürgen Bosch
   Johns Hopkins Bloomberg School of Public Health
   Department of Biochemistry  Molecular Biology
   Johns Hopkins Malaria Research Institute
   615 North Wolfe Street, W8708
   Baltimore, MD 21205
   Phone: +1-410-614-4742
   Lab:  +1-410-614-4894
   Fax:  +1-410-955-3655
   http://web.mac.com/bosch_lab/
  
   On Jul 11, 2011, at 6:03 AM, F.Xavier Gomis-Rüth wrote:
  
Dear CCP4ers,
   I think this is a very interesting initiative and it could potentially
 lead
   to a discussion within the board.
   Best,
   Xavier
  
  
  
    Mensaje original   Asunto: Could Biological Negative
   Results be published?  Fecha: Sun, 10 Jul 2011 21:39:52 -0500  De:
 David
   Alcantara listmas...@mail.arjournals.com
 listmas...@mail.arjournals.com  Para:
   f...@ibmb.csic.es
  
Dear colleague,
  
   As you are well aware it is common in our field that many of our
   endeavors do not lead to the results we want or expect. Numerous tests
   and experiments have outcomes that we share with our immediate
   colleagues during informal meetings, but that we are not considering
   material for publication. As a result a wealth of information is never
   brought to the attention of the greater public, which is not only
   unfortunate, but also has others repeating similar studies to produce
   the same negative results. Not only are a lot of resources like time
   and money wasted in this way, but it also leads to frustration that
   could have been prevented if only the scientists would have been aware
   of the negative results of earlier studies.
  
   My name is David Alcantara and, on behalf of our editorial board,
   I’d like to invite you to submit your articles to The All Results
   Journals: Biology, a new journal that focuses on publishing the grey
   literature that has never been published. It is our goal to compile
   and publish those experiments that led to negative results or to
   outcomes that were not expected and were not before considered for
   publication. We of The All Results Journals feel that it is equally
   important to publish these results together with interpretations of
   the scientists involved and in this way offer a solution to the
   problem that publication bias is causing, because of a strong emphasis
   on positive results.
  
   The All Results Journals:Biol is a peer-reviewed journal dedicated to
   publishing articles with negative results and outcomes that were not
   expected and were not before considered for publication in all areas
   of Biology (pure and applied). The Journal is TOTAL Open Access (no
   fees to publish and read) and is being indexed by well-known
   scientific databases such as Web of Knowledge, Scirus, and Pubmed This
   will assure maximum exposure of your articles.
  
   We expect to publish articles within four to six weeks of submission,
   and our award-winning OJS Publications Web Editions Platform will
   showcase your important findings to the international scientific
   community.
  
   Please check our info for authors to submit your articles at:
  
 http://www.arjournals.com/ojs/index.php?journal=Biolpage=informationop=authors
 
 http://arjournals.com/ojs/index.php?journal=Biolpage=informationop=authors

Re: [ccp4bb] Fwd: Could Biological Negative Results be published?

2011-07-11 Thread Van Den Berg, Bert
Negative results are not necessarily criticisms of colleagues, at least I don't 
think it should be perceived as such. And if it is, folks should just grow 
up...:-)
It may be (too) idealistic, but one could argue that the most important aspect 
of scientific experiments is reproducibility. If no-one is able to reproduce 
those fantastic data, what is the value of those data? I just wonder how many 
dogma's are out there that are taken for granted (its from a great lab), 
but that no-one has taken the time to verify.
Maybe once we get used to the publication of (properly reviewed) negative data, 
reality will change?

From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] On Behalf Of Bernhard Rupp 
[hofkristall...@gmail.com]
Sent: Monday, July 11, 2011 9:05 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] Fwd: Could Biological Negative Results be published?

Hmmm...I probably have a bit of experience in this business of 'negative 
results'.
Let me just say that it definitely has negative impact on your career when you 
criticize colleagues.
It is extremely difficult to cut through the 'defendant's' and editorial 
denial. In my experience
a lot of lip service is paid to the modern viewpoint of the scientific method 
which Tim optimistically voices,
but alas, we live in a real world of postmodern relativism and subjective 
interest, and reality looks different.

For those attending the IUCr meeting (shameless advert to follow), I have 
changed the title of my
talk in the validation MS to
Transgressing Conventional Boundaries: Postmodern Structural Biology.

The absence of the word 'crystallography' in the title is not a coincidence.

Cheers, BR


On Mon, Jul 11, 2011 at 4:31 AM, Tim Gruene 
t...@shelx.uni-ac.gwdg.demailto:t...@shelx.uni-ac.gwdg.de wrote:
On Mon, Jul 11, 2011 at 04:35:31PM +0530, Partha Chakrabarti wrote:
 What if the negative results contradict some recent papers in big journals?

In that case it is certainly not a negative result and I am actually surprised
someone even comes up with the idea of not publishing a result just for lip
service. A good scientist is happy to deal with criticism of his or her
results - if they would not get criticised, they would not have been worth
publishing.

Cheers, Tim

 Would the PI risk his / her contacts  connections? Of course for the PhD
 student or postdoc, it matters a lot to get it 'published'..



 On Mon, Jul 11, 2011 at 4:27 PM, Bosch, Juergen 
 jubo...@jhsph.edumailto:jubo...@jhsph.edu wrote:

  http://www.jnrbm.com/
 
  Might this be what you are looking for ?
 
  Jürgen
 
  ..
  Jürgen Bosch
  Johns Hopkins Bloomberg School of Public Health
  Department of Biochemistry  Molecular Biology
  Johns Hopkins Malaria Research Institute
  615 North Wolfe Street, W8708
  Baltimore, MD 21205
  Phone: +1-410-614-4742tel:%2B1-410-614-4742
  Lab:  +1-410-614-4894tel:%2B1-410-614-4894
  Fax:  +1-410-955-3655tel:%2B1-410-955-3655
  http://web.mac.com/bosch_lab/
 
  On Jul 11, 2011, at 6:03 AM, F.Xavier Gomis-Rüth wrote:
 
   Dear CCP4ers,
  I think this is a very interesting initiative and it could potentially lead
  to a discussion within the board.
  Best,
  Xavier
 
 
 
   Mensaje original   Asunto: Could Biological Negative
  Results be published?  Fecha: Sun, 10 Jul 2011 21:39:52 -0500  De: David
  Alcantara 
  listmas...@mail.arjournals.commailto:listmas...@mail.arjournals.comlistmas...@mail.arjournals.commailto:listmas...@mail.arjournals.com
Para:
  f...@ibmb.csic.esmailto:f...@ibmb.csic.es
 
   Dear colleague,
 
  As you are well aware it is common in our field that many of our
  endeavors do not lead to the results we want or expect. Numerous tests
  and experiments have outcomes that we share with our immediate
  colleagues during informal meetings, but that we are not considering
  material for publication. As a result a wealth of information is never
  brought to the attention of the greater public, which is not only
  unfortunate, but also has others repeating similar studies to produce
  the same negative results. Not only are a lot of resources like time
  and money wasted in this way, but it also leads to frustration that
  could have been prevented if only the scientists would have been aware
  of the negative results of earlier studies.
 
  My name is David Alcantara and, on behalf of our editorial board,
  I’d like to invite you to submit your articles to The All Results
  Journals: Biology, a new journal that focuses on publishing the grey
  literature that has never been published. It is our goal to compile
  and publish those experiments that led to negative results or to
  outcomes that were not expected and were not before considered for
  publication. We of The All Results Journals feel that it is equally
  important to publish these results together with interpretations of
  the scientists involved

Re: [ccp4bb] Fwd: Could Biological Negative Results be published?

2011-07-11 Thread Phoebe Rice
This brings up a philosophical caveat that one should be very careful about 
labeling one set of potential results negative and another positive before 
even doing the experiment, because its all too easy to see what you hoped to 
see even if it was only marginally there.

The best experimentalists rig things so that something will be learned from any 
possible result.  

Of course, in this light, crystallization is a really stupid experiment.  And 
by the time I'm really convinced that we're getting nowhere crystallizing 
something, I'm too demoralized to bother writing up all the ways to not 
crystallize it.

  Phoebe

=
Phoebe A. Rice
Dept. of Biochemistry  Molecular Biology
The University of Chicago
phone 773 834 1723
http://bmb.bsd.uchicago.edu/Faculty_and_Research/01_Faculty/01_Faculty_Alphabetically.php?faculty_id=123
http://www.rsc.org/shop/books/2008/9780854042722.asp


 Original message 
Date: Mon, 11 Jul 2011 16:35:31 +0530
From: CCP4 bulletin board CCP4BB@JISCMAIL.AC.UK (on behalf of Partha 
Chakrabarti ppc...@gmail.com)
Subject: Re: [ccp4bb] Fwd: Could Biological Negative Results be published?  
To: CCP4BB@JISCMAIL.AC.UK

   What if the negative results contradict some recent
   papers in big journals? Would the PI risk his / her
   contacts  connections? Of course for the PhD
   student or postdoc, it matters a lot to get it
   'published'..

   On Mon, Jul 11, 2011 at 4:27 PM, Bosch, Juergen
   jubo...@jhsph.edu wrote:

 http://www.jnrbm.com/
 Might this be what you are looking for ?
 Jürgen
 ..
 Jürgen Bosch
 Johns Hopkins Bloomberg School of Public Health
 Department of Biochemistry  Molecular Biology
 Johns Hopkins Malaria Research Institute
 615 North Wolfe Street, W8708
 Baltimore, MD 21205
 Phone: +1-410-614-4742
 Lab:      +1-410-614-4894
 Fax:      +1-410-955-3655
 http://web.mac.com/bosch_lab/
 On Jul 11, 2011, at 6:03 AM, F.Xavier Gomis-Rüth
 wrote:

   Dear CCP4ers,
   I think this is a very interesting initiative
   and it could potentially lead to a discussion
   within the board.
   Best,
   Xavier

    Mensaje original 

   Asunto: Could Biological Negative Results be 
   published?   
Fecha: Sun, 10 Jul 2011 21:39:52 -0500  
   De: David Alcantara  
   listmas...@mail.arjournals.com 
 Para: f...@ibmb.csic.es

  Dear colleague,

 As you are well aware it is common in our field that many of our
 endeavors do not lead to the results we want or expect. Numerous tests
 and experiments have outcomes that we share with our immediate
 colleagues during informal meetings, but that we are not considering
 material for publication. As a result a wealth of information is never
 brought to the attention of the greater public, which is not only
 unfortunate, but also has others repeating similar studies to produce
 the same negative results. Not only are a lot of resources like time
 and money wasted in this way, but it also leads to frustration that
 could have been prevented if only the scientists would have been aware
 of the negative results of earlier studies.

 My name is David Alcantara and, on behalf of our editorial board,
 I’d like to invite you to submit your articles to The All Results
 Journals: Biology, a new journal that focuses on publishing the grey
 literature that has never been published. It is our goal to compile
 and publish those experiments that led to negative results or to
 outcomes that were not expected and were not before considered for
 publication. We of The All Results Journals feel that it is equally
 important to publish these results together with interpretations of
 the scientists involved and in this way offer a solution to the
 problem that publication bias is causing, because of a strong emphasis
 on positive results.

 The All Results Journals:Biol is a peer-reviewed journal dedicated to
 publishing articles with negative results and outcomes that were not
 expected and were not before considered for publication in all areas
 of Biology (pure and applied). The Journal is TOTAL Open Access (no
 fees to publish and read) and is being indexed by well-known
 scientific databases such as Web of Knowledge, Scirus, and Pubmed This
 will assure maximum exposure of your articles.

 We expect to publish articles within four to six weeks of submission,
 and our award-winning OJS Publications Web Editions Platform will
 showcase your important findings to the international scientific
 community.

 Please check our info for authors to submit your articles at:

 http://www.arjournals.com/ojs/index.php?journal=Biolpage=informationop=authors
 http://arjournals.com/ojs/index.php?journal=Biolpage=informationop=authors

 Thank you very much for your time