Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-10 Thread David Roberts
Not only do you not need a high-end graphics card, you don't even need 
the proper graphics drivers installed.  When I went to FC13 (upgrade 
from FC7, I don't know why), my quadro fx1400 was no longer supported.  
It would not work with hardware stereo (emitters/glasses of old).  I 
went to Zalman monitors and all is great.  Frankly, stereo is not needed 
as much in a nice bright LCD monitor (very crisp, looks great), but if 
you want it, Zalman is the way to go (passive stereo - light glasses, no 
hardware requirements beyond the monitor)


Good luck

Dave

On 5/10/2011 12:27 AM, Duangrudee Tanramluk wrote:

Dear Yu,

The graphic card I am using is Nvidia Quadro FX580.  If all you want is Pymol 
and Coot,  you don't need a high-end graphic card.

Some commercial molecular viewer requires a really high-end Quadro graphic 
card. If you plan to use those packages on the same machine, you may want to 
check their websites for the high quality 3D-stereo before purchasing them.

Cheers,
Duangrudee


___
Duangrudee Tanramluk, Ph.D.
Institute of Molecular Biosciences, Mahidol University
Puttamonthon 4 Road, Salaya, Nakhon Pathom 73170 THAILAND
   


Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-10 Thread Tim Gruene
Since the technique (of using polarised light) applied by the Zalman was
invented in the 1920's, it's probably little surprising that we don't need
special hardware for using it ;-)

Cheers, Tim

On Tue, May 10, 2011 at 07:08:10AM -0400, David Roberts wrote:
 Not only do you not need a high-end graphics card, you don't even
 need the proper graphics drivers installed.  When I went to FC13
 (upgrade from FC7, I don't know why), my quadro fx1400 was no longer
 supported.  It would not work with hardware stereo (emitters/glasses
 of old).  I went to Zalman monitors and all is great.  Frankly,
 stereo is not needed as much in a nice bright LCD monitor (very
 crisp, looks great), but if you want it, Zalman is the way to go
 (passive stereo - light glasses, no hardware requirements beyond the
 monitor)
 
 Good luck
 
 Dave
 
 On 5/10/2011 12:27 AM, Duangrudee Tanramluk wrote:
 Dear Yu,
 
 The graphic card I am using is Nvidia Quadro FX580.  If all you want is 
 Pymol and Coot,  you don't need a high-end graphic card.
 
 Some commercial molecular viewer requires a really high-end Quadro graphic 
 card. If you plan to use those packages on the same machine, you may want to 
 check their websites for the high quality 3D-stereo before purchasing them.
 
 Cheers,
 Duangrudee
 
 
 ___
 Duangrudee Tanramluk, Ph.D.
 Institute of Molecular Biosciences, Mahidol University
 Puttamonthon 4 Road, Salaya, Nakhon Pathom 73170 THAILAND

-- 
--
Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen

phone: +49 (0)551 39 22149

GPG Key ID = A46BEE1A



signature.asc
Description: Digital signature


Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-10 Thread Eric Bennett
Nvidia lists that monitor on their list of supported hardware:
http://www.nvidia.com/object/3d-vision-requirements.html

They even sell some Acer monitors in their online store although they are 
labeled in conflicting ways.

I tried upgrading the driver yesterday to the 270.41.06 version but it didn't 
make any difference, still only 100 Hz.  Are you using Windows or Linux?  We're 
using the 64-bit Linux driver.   

-Eric



On May 9, 2011, at 4:26 AM, Takaaki Fukami wrote:

 not seen a working 120 Hz stereo setup working on the Acer GD235 monitor.
 if you ask the Nvidia driver or the monitor, it reports 100 Hz instead
 
 This is what I encountered on Dell Alienware OptX AW2310 with Quadro FX3800,
 which has been fixed by nVIDIA Linux driver update (in 256.44).
 
 I don't know if the Acer monitor is compatible or not, 
 it seems better to ask NVIDIA directly. see:
 http://twitter.com/#!/NVIDIAQuadro/status/65188179753435137
 
 
 Takaaki Fukami
 
 -
 Discovery Platform Technology Dept. Gr.5
 Chugai Pharmaceutical Co.,Ltd.


Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-10 Thread Sabuj Pattanayek
Hi,

 I tried upgrading the driver yesterday to the 270.41.06 version but it didn't 
 make any difference, still only 100 Hz.  Are you using Windows or Linux?  
 We're using the 64-bit Linux driver.

We had the same problem initially with the Asus VG236 until we went
into nvidia-settings and turned off Force Full GPU Scaling for the
monitor under the GPU settings. Usually this option is unchecked for
standard 60 - 75Hz LCDs but I found this was checked for some reason,
unchecked it and then the monitor went blank momentarily and came
back. Then the refresh rate increased from 99.99Hz to 119.98Hz. The
information menu in the monitor itself also showed 120Hz. This has to
be applied for every user or you can copy ~/.nvidia-settings.rc to
other users' directories. The system is currently using the 260.19.26
linux 64 bit driver running CentOS5. Here's the xorg.conf :

# nvidia-settings: X configuration file generated by nvidia-settings
# nvidia-settings:  version 260.19.26
(buildmeis...@swio-display-x86-rhel47-07.nvidia.com)  Mon Nov 29
01:13:18 PST 2010

Section ServerLayout
Identifier Layout0
Screen  0  Screen0 0 0
InputDeviceKeyboard0 CoreKeyboard
InputDeviceMouse0 CorePointer
Option Xinerama 0
EndSection

Section Files
FontPathunix/:7100
EndSection

Section Module
Load   dbe
Load   extmod
Load   type1
Load   freetype
Load   glx
EndSection

Section InputDevice
# generated from default
Identifier Mouse0
Driver mouse
Option Protocol auto
Option Device /dev/input/mice
Option Emulate3Buttons no
Option ZAxisMapping 4 5
EndSection

Section InputDevice
# generated from data in /etc/sysconfig/keyboard
Identifier Keyboard0
Driver kbd
Option XkbLayout us
Option XkbModel pc105
EndSection

Section Monitor
# HorizSync source: edid, VertRefresh source: edid
Identifier Monitor0
VendorName Unknown
ModelName  Ancor Communications Inc ASUS VG236
HorizSync   24.0 - 140.0
VertRefresh 50.0 - 122.0
#Option ExactModeTimingsDVI TRUE
# 1920x1080 @ 120.00 Hz (GTF) hsync: 138.84 kHz; pclk: 368.76 MHz
Modeline 1920x1080_120  368.76  1920 2072 2288 2656  1080 1081
1084 1157  -HSync +Vsync
# 1920x1080 @ 110.00 Hz (GTF) hsync: 126.61 kHz; pclk: 336.28 MHz
Modeline 1920x1080_110  336.28  1920 2072 2288 2656  1080 1081
1084 1151  -HSync +Vsync
# 1920x1080 @ 100.00 Hz (GTF) hsync: 114.40 kHz; pclk: 302.02 MHz
Modeline 1920x1080_100  302.02  1920 2072 2280 2640  1080 1081
1084 1144  -HSync +Vsync
# Monitor preferred modeline (60.0 Hz vsync, 67.5 kHz hsync, ratio
16/9, 95 dpi)
#ModeLine 1920x1080 148.5 1920 2008 2052 2200 1080 1084 1089
1125 +hsync +vsync
ModeLine   1920x1080 148.500 1920 2008 2052 2200 1080 1084
1089 1125 +hsync +vsync
Option DPMS
EndSection

Section Device
Identifier Device0
Driver nvidia
VendorName NVIDIA Corporation
BoardName  Quadro FX 3700
Option Stereo 10
EndSection

Section Screen
Identifier Screen0
Device Device0
MonitorMonitor0
DefaultDepth24
Option TwinView 0
Option metamodes 1920x1080_120 +0+0; 1920x1080_110
+0+0; 1920x1080_100 +0+0
SubSection Display
Depth   24
EndSubSection
EndSection

Section Extensions
Option  Composite disable
EndSection

###

I don't know if the modelines are actually necessary. The nvidia
driver usually recognizes metamodes such as 1920x1080_120.

HTH,
Sabuj Pattanayek


Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-10 Thread Jim Fairman
Turning off force full gpu scaling is indeed the solution to this problem
(at least it was for me).
On May 10, 2011 6:58 PM, Eric Bennett er...@pobox.com wrote:
 Nvidia lists that monitor on their list of supported hardware:
 http://www.nvidia.com/object/3d-vision-requirements.html

 They even sell some Acer monitors in their online store although they are
labeled in conflicting ways.

 I tried upgrading the driver yesterday to the 270.41.06 version but it
didn't make any difference, still only 100 Hz. Are you using Windows or
Linux? We're using the 64-bit Linux driver.

 -Eric



 On May 9, 2011, at 4:26 AM, Takaaki Fukami wrote:

 not seen a working 120 Hz stereo setup working on the Acer GD235
monitor.
 if you ask the Nvidia driver or the monitor, it reports 100 Hz instead

 This is what I encountered on Dell Alienware OptX AW2310 with Quadro
FX3800,
 which has been fixed by nVIDIA Linux driver update (in 256.44).

 I don't know if the Acer monitor is compatible or not,
 it seems better to ask NVIDIA directly. see:
 http://twitter.com/#!/NVIDIAQuadro/status/65188179753435137


 Takaaki Fukami

 -
 Discovery Platform Technology Dept. Gr.5
 Chugai Pharmaceutical Co.,Ltd.


Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-10 Thread Schubert, Carsten [PRDUS]
Eric, Takaaki:

I just remembered that we ran into the same problem. If you are using Linux try 
launching 'nvidia-settings' and disable GPU scaling. That helped with some of 
our monitors, which exhibited the same problem. Not sure if that would be 
applicable to Windows though. 

HTH 

Carsten


-Original Message-
From: CCP4 bulletin board on behalf of Eric Bennett
Sent: Tue 5/10/2011 6:58 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'
 
Nvidia lists that monitor on their list of supported hardware:
http://www.nvidia.com/object/3d-vision-requirements.html

They even sell some Acer monitors in their online store although they are 
labeled in conflicting ways.

I tried upgrading the driver yesterday to the 270.41.06 version but it didn't 
make any difference, still only 100 Hz.  Are you using Windows or Linux?  We're 
using the 64-bit Linux driver.   

-Eric



On May 9, 2011, at 4:26 AM, Takaaki Fukami wrote:

 not seen a working 120 Hz stereo setup working on the Acer GD235 monitor.
 if you ask the Nvidia driver or the monitor, it reports 100 Hz instead
 
 This is what I encountered on Dell Alienware OptX AW2310 with Quadro FX3800,
 which has been fixed by nVIDIA Linux driver update (in 256.44).
 
 I don't know if the Acer monitor is compatible or not, 
 it seems better to ask NVIDIA directly. see:
 http://twitter.com/#!/NVIDIAQuadro/status/65188179753435137
 
 
 Takaaki Fukami
 
 -
 Discovery Platform Technology Dept. Gr.5
 Chugai Pharmaceutical Co.,Ltd.




Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-10 Thread Takaaki Fukami
Hi, Eric and Carsten,

 If you are using Linux try launching 'nvidia-settings' and disable GPU 
 scaling.

My system was RedHat5 64-bit.
I set the option at that time, though I forgot to mention it…

nvidia-settings stores the settings into ~/.nvidia-setting-rc, therefore it is 
not system-wide.
I also annoyed that I should launch nvidia-settings when I login.

Instead launching 'nvidia-settings', I set FlatPanelProperties in xorg.conf 
as below.

Section Device
Identifier Videocard0
Driver   nvidia
Option   Stereo   10
Option   FlatPanelProperties Scaling = Native
EndSection


Hope it helps.

Takaaki


From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Schubert, 
Carsten [PRDUS]
Sent: Wednesday, May 11, 2011 9:48 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'


Eric, Takaaki:

I just remembered that we ran into the same problem. If you are using Linux try 
launching 'nvidia-settings' and disable GPU scaling. That helped with some of 
our monitors, which exhibited the same problem. Not sure if that would be 
applicable to Windows though.

HTH

Carsten


-Original Message-
From: CCP4 bulletin board on behalf of Eric Bennett
Sent: Tue 5/10/2011 6:58 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

Nvidia lists that monitor on their list of supported hardware:
http://www.nvidia.com/object/3d-vision-requirements.html

They even sell some Acer monitors in their online store although they are 
labeled in conflicting ways.

I tried upgrading the driver yesterday to the 270.41.06 version but it didn't 
make any difference, still only 100 Hz.  Are you using Windows or Linux?  We're 
using the 64-bit Linux driver.

-Eric



On May 9, 2011, at 4:26 AM, Takaaki Fukami wrote:

 not seen a working 120 Hz stereo setup working on the Acer GD235 monitor.
 if you ask the Nvidia driver or the monitor, it reports 100 Hz instead

 This is what I encountered on Dell Alienware OptX AW2310 with Quadro FX3800,
 which has been fixed by nVIDIA Linux driver update (in 256.44).

 I don't know if the Acer monitor is compatible or not,
 it seems better to ask NVIDIA directly. see:
 http://twitter.com/#!/NVIDIAQuadro/status/65188179753435137


 Takaaki Fukami

 -
 Discovery Platform Technology Dept. Gr.5
 Chugai Pharmaceutical Co.,Ltd.



Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-09 Thread Takaaki Fukami
 not seen a working 120 Hz stereo setup working on the Acer GD235 monitor.
 if you ask the Nvidia driver or the monitor, it reports 100 Hz instead

This is what I encountered on Dell Alienware OptX AW2310 with Quadro FX3800,
which has been fixed by nVIDIA Linux driver update (in 256.44).

I don't know if the Acer monitor is compatible or not, 
it seems better to ask NVIDIA directly. see:
http://twitter.com/#!/NVIDIAQuadro/status/65188179753435137


Takaaki Fukami

-
Discovery Platform Technology Dept. Gr.5
Chugai Pharmaceutical Co.,Ltd.



-Original Message-
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Eric 
Bennett
Sent: Saturday, May 07, 2011 8:38 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

We recently had issues setting up a 3D projector and have tried lots of 
combinations of monitors, drivers, cards, glasses, etc.  The answer seems to be 
that interchangeability is very complicated and you won't know unless you try 
it.

 For example, with the last version of the Nvidia driver I tested, the driver 
refused to put out an Nvidia 3D Vision sync signal (stereo 10 in xorg.conf) 
unless there was a 3D capable LCD attached.  I don't know of any technical 
reason the Nvidia 3D Vision couldn't be used with a CRT but Nvidia has 
apparently chosen to disable it (or at least make it hard to enable) in the 
Linux driver.

Going the other direction, using RealD with and LCD system, it might be 
possible but you probably have to match your RealD emitter with RealD glasses.  
Older CrystalEyes glasses (CE3 and earlier) generally do not work with LCD 
monitors because of the polarization in the glasses.  We recently got some CE4 
glasses and they don't seem to have that problem although in practice we are 
using them with a projector, not LCD monitors.  But I don't really like the 
CE4's, there is too much of my field of vision under the glasses that they 
don't cover.

We've observed some really weird configurations that appear to mostly work, 
such as plugging in a RealD emitter and glasses when the driver is configured 
to output a signal for Nvidia 3D Vision (stereo 10 option under Linux).  You 
don't say whether you are using Windows or Linux and there may be variations in 
the drivers, variations by card, etc.  Regarding card to card variations, we've 
observed 3D setups in conference rooms with multiple emitters where some Nvidia 
cards happily drive multiple emitters with particular splitters  boosters, but 
other Nvidia cards don't.  

The bottom line is if you mix hardware you might have problems and vendors are 
unlikely to help you.  If you have CE4 glasses already, you can try it with an 
LCD and it may work.  Otherwise, if you have to buy new glasses (ie, you have 
CE3 or older), you might as well get the Nvidia package with the emitter 
included.  3D Vision Pro uses the 2.4 GHz band instead of IR to transmit the 
sync signal so if you were setting up a conference room in theory the Pro 
version might be less likely to leave dead zones in the conference room.  For a 
single user workstation it's very unlikely that you would get any benefit.

Just to muddy the waters a bit, I have not seen a working 120 Hz stereo setup 
working on the Acer GD235 monitor.  We have a bunch of them set up, and we put 
a 120 Hz mode line in xorg.conf.  If you ask X11 it says it's running at 120.  
But if you ask the Nvidia driver or the monitor, it reports 100 Hz instead, and 
visually there is enough flickering that the monitor and the driver seem to 
have the correct number.  I'm curious if anyone else here has looked in detail 
to make sure their Acer-based system is running at 120 and found that it is 
actually doing what people claim it can do.  I find the 100 Hz LCD flicker 
annoying over long periods so I am still a neanderthal CRT user.  My coworkers 
were convinced their LCD systems were running at 120, when they were actually 
only running at 100.  I'm not sure if this is a driver problem or a monitor 
problem.

-Eric


On May 6, 2011, at 11:27 AM, zhang yu wrote:

 Dear colleagues, 
 
 Sorry to present the stereo issue to the board again.
 
 Since my old SGI CRT monitor only has 75 HZ refresh rate, the flickering in 
 stereo mode bothered me a lot.  Recently, I want to update my old CRT to 120 
 HZ LCD.  I have a Nvidia Quadro FX3800 in my workstation. I would like to 
 make sure  some issues before I make the upgrade.
 
 1.  Can I apply the previous stereo emitter (Purchased from Real D, Model 
 #E-2) to 120HZ LCD? Although the company told me this emitter is not 
 compatible with LCD, could some one tell me why? Is it true that the Nvidia 
 3D vision is the only solution for the stereo in LCD?
 
 2. Nvidia supply two kinds of 3D emitters. One of them is 3D vision, while 
 the other one is 3D vision pro.  Which one is sufficient for 
 crystallographier user? (3D vision pro is much more expensive than 3D

Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-09 Thread zhang yu
Dear Duangrudee

Thank you for your information. Is there any hardware requirement for the
stereo in coot and pymol with Zalman monitor? It seems that Hign-End Nvidia
graphic cards (Quadro FX 3800, FX 4800 ) are not necessary.

Yu


2011/5/8 Duangrudee Tanramluk nano...@gmail.com

 Dear Yu,

 Pymol also has a Zalman option. The monitor comes with 2 pair of
 light-weight polarized glasses, i.e. one for clipping on your prescription
 glasses and another regular one.

 If you have the Zalman monitor and its polarised glasses, you can see this
 .gif movie in 3D on google chrome, just click on the picture to see in full
 size.

 http://nanonan.wordpress.com/2011/03/14/making-zalman-3d-stereoscopic-movie-with-pymol/

 May be you can use this movie for trial with other 120 Hz monitor/glasses.

 Hope it helps,
 Duangrudee

 

 Duangrudee Tanramluk, Ph.D.
 Institute of Molecular Biosciences, Mahidol University
 Puttamonthon 4 Road, Salaya, Nakhon Pathom 73170 THAILAND




-- 
Yu Zhang
HHMI associate
Waksman Institute, Rutgers University
190 Frelinghuysen Rd.
Piscataway, NJ, 08904


Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-09 Thread Duangrudee Tanramluk
Dear Yu,

The graphic card I am using is Nvidia Quadro FX580.  If all you want is Pymol 
and Coot,  you don't need a high-end graphic card. 

Some commercial molecular viewer requires a really high-end Quadro graphic 
card. If you plan to use those packages on the same machine, you may want to 
check their websites for the high quality 3D-stereo before purchasing them.

Cheers,
Duangrudee


___
Duangrudee Tanramluk, Ph.D.
Institute of Molecular Biosciences, Mahidol University
Puttamonthon 4 Road, Salaya, Nakhon Pathom 73170 THAILAND


Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-08 Thread Duangrudee Tanramluk
Dear Yu,

Pymol also has a Zalman option. The monitor comes with 2 pair of light-weight 
polarized glasses, i.e. one for clipping on your prescription glasses and 
another regular one.

If you have the Zalman monitor and its polarised glasses, you can see this .gif 
movie in 3D on google chrome, just click on the picture to see in full size. 
http://nanonan.wordpress.com/2011/03/14/making-zalman-3d-stereoscopic-movie-with-pymol/

May be you can use this movie for trial with other 120 Hz monitor/glasses.

Hope it helps,
Duangrudee



Duangrudee Tanramluk, Ph.D.
Institute of Molecular Biosciences, Mahidol University
Puttamonthon 4 Road, Salaya, Nakhon Pathom 73170 THAILAND


Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-06 Thread Jim Fairman
1.  No you cannot use your old stereo emitter.  The 3D Vision Emitter is
required for stereo on 120 Hz LCD monitors.  You will also need new shutter
glasses from Nvidia, but these some with the emitter.  I'm not sure the
reason, but I'd guess that the older emitter can't transmit the signal at
the correct frequency to get 60 Hz to each eye.

On a side note, consider which operating system you are running on the
system to be used for stereo.  You'll need the 3-pin stereo connector if you
want to do stereo in Linux.  For Windows it isn't required.  Some computers
that Dell and other manufacturers sell with FX3800 cards don't have one
built in, and you will need to buy an adapter that hooks into the video card
to provide the port.

2.  The normal 3D Vision system uses IR signals to communicate between the
emitter and the shutter glasses.  3D Vision Pro uses RF signals for
communication between the glasses and the emitter and has a longer range and
doesn't require line-of-sight like the IR system (hence the hefty price
difference you've noticed).  I don't believe the glasses from the normal 3D
Vision kit are compatible with the 3D Vision Pro system due to the
difference in signaling systems, but I haven't tested this.  If you're going
to be sitting in front of a monitor doing modeling and don't have alot of IR
interference in the same room, the normal 3D Vision version will suffice
for your needs.  3D Vision Pro is more geared toward having large meeting
rooms and presentation halls equipped so everyone in the room can view 3D on
a large screen driven by a 120 Hz DLP projector.

3. I don't wear prescription eye glasses, but I do have long modeling
sessions without any discomfort wearing these.  They come with several
inter-changable nose-pieces so you can pick the one that fits you most
comfortably.

On Fri, May 6, 2011 at 11:27 AM, zhang yu ccp4f...@gmail.com wrote:

 Dear colleagues,

 Sorry to present the stereo issue to the board again.

 Since my old SGI CRT monitor only has 75 HZ refresh rate, the flickering in
 stereo mode bothered me a lot.  Recently, I want to update my old CRT to 120
 HZ LCD.  I have a Nvidia Quadro FX3800 in my workstation. I would like to
 make sure  some issues before I make the upgrade.

 1.  Can I apply the previous stereo emitter (Purchased from Real D, Model
 #E-2) to 120HZ LCD? Although the company told me this emitter is not
 compatible with LCD, could some one tell me why? Is it true that the Nvidia
 3D vision is the only solution for the stereo in LCD?

 2. Nvidia supply two kinds of 3D emitters. One of them is 3D vision,
 while the other one is 3D vision pro.  Which one is sufficient for
 crystallographier user? (3D vision pro is much more expensive than 3D
 vision)
 It seems that 3D vision is for home user and powered by the Nvidia
 GeForce  series graphic cards. While 3D vision pro is for professional
 user and powered by Nvidia Quardro series graphic card .

 3. It looks that the Nvidia 3D glasses are very compact. Is it comfortable
 for someone like me already with eyeglasses?


 Thanks

 Yu
 --
 Yu Zhang
 HHMI associate
 Waksman Institute, Rutgers University
 190 Frelinghuysen Rd.
 Piscataway, NJ, 08904





-- 
Jim Fairman, Ph D.
Post-Doctoral Fellow
National Institutes of Health - NIDDK
The Buchanan Lab http://www-mslmb.niddk.nih.gov/buchanan/index.html
Lab: 1-301-594-9229
E-mail: fairman@gmail.com james.fair...@nih.gov


Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-06 Thread zhang yu
Dave, thanks.

There is an option for Zalman stereo in Coot. Could Zalman stereo also
display properly in Pymol?

Yu

2011/5/6 Dave Roberts drobe...@depauw.edu

 I'm very happy with Zalman passive stereo. No hardware requirements beyond
 Zalman monitor. Monitors cost $500ish for 21 and 700ish for 24. Any video
 card, any software. Glasses are the same as movie glasses ($2 per pair), no
 batteries, no flicker. Very nice really.

 Dave

 Sent from my iPhone

 On May 6, 2011, at 11:27 AM, zhang yu ccp4f...@gmail.com wrote:

  Dear colleagues,
 
  Sorry to present the stereo issue to the board again.
 
  Since my old SGI CRT monitor only has 75 HZ refresh rate, the flickering
 in stereo mode bothered me a lot.  Recently, I want to update my old CRT to
 120 HZ LCD.  I have a Nvidia Quadro FX3800 in my workstation. I would like
 to make sure  some issues before I make the upgrade.
 
  1.  Can I apply the previous stereo emitter (Purchased from Real D, Model
 #E-2) to 120HZ LCD? Although the company told me this emitter is not
 compatible with LCD, could some one tell me why? Is it true that the Nvidia
 3D vision is the only solution for the stereo in LCD?
 
  2. Nvidia supply two kinds of 3D emitters. One of them is 3D vision,
 while the other one is 3D vision pro.  Which one is sufficient for
 crystallographier user? (3D vision pro is much more expensive than 3D
 vision)
  It seems that 3D vision is for home user and powered by the Nvidia
 GeForce  series graphic cards. While 3D vision pro is for professional
 user and powered by Nvidia Quardro series graphic card .
 
  3. It looks that the Nvidia 3D glasses are very compact. Is it
 comfortable for someone like me already with eyeglasses?
 
 
  Thanks
 
  Yu
  --
  Yu Zhang
  HHMI associate
  Waksman Institute, Rutgers University
  190 Frelinghuysen Rd.
  Piscataway, NJ, 08904
 
 




-- 
Yu Zhang
HHMI associate
Waksman Institute, Rutgers University
190 Frelinghuysen Rd.
Piscataway, NJ, 08904


Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-06 Thread zhang yu
Jim, thanks.

I am using Linux and with a 3-pin stereo bracket hooked to my Nvidia Quadro
FX3800.  It is ready to go.

2011/5/6 Jim Fairman fairman@gmail.com

 1.  No you cannot use your old stereo emitter.  The 3D Vision Emitter is
 required for stereo on 120 Hz LCD monitors.  You will also need new shutter
 glasses from Nvidia, but these some with the emitter.  I'm not sure the
 reason, but I'd guess that the older emitter can't transmit the signal at
 the correct frequency to get 60 Hz to each eye.

 On a side note, consider which operating system you are running on the
 system to be used for stereo.  You'll need the 3-pin stereo connector if you
 want to do stereo in Linux.  For Windows it isn't required.  Some computers
 that Dell and other manufacturers sell with FX3800 cards don't have one
 built in, and you will need to buy an adapter that hooks into the video card
 to provide the port.

 2.  The normal 3D Vision system uses IR signals to communicate between
 the emitter and the shutter glasses.  3D Vision Pro uses RF signals for
 communication between the glasses and the emitter and has a longer range and
 doesn't require line-of-sight like the IR system (hence the hefty price
 difference you've noticed).  I don't believe the glasses from the normal 3D
 Vision kit are compatible with the 3D Vision Pro system due to the
 difference in signaling systems, but I haven't tested this.  If you're going
 to be sitting in front of a monitor doing modeling and don't have alot of IR
 interference in the same room, the normal 3D Vision version will suffice
 for your needs.  3D Vision Pro is more geared toward having large meeting
 rooms and presentation halls equipped so everyone in the room can view 3D on
 a large screen driven by a 120 Hz DLP projector.

 3. I don't wear prescription eye glasses, but I do have long modeling
 sessions without any discomfort wearing these.  They come with several
 inter-changable nose-pieces so you can pick the one that fits you most
 comfortably.


 On Fri, May 6, 2011 at 11:27 AM, zhang yu ccp4f...@gmail.com wrote:

 Dear colleagues,

 Sorry to present the stereo issue to the board again.

 Since my old SGI CRT monitor only has 75 HZ refresh rate, the flickering
 in stereo mode bothered me a lot.  Recently, I want to update my old CRT to
 120 HZ LCD.  I have a Nvidia Quadro FX3800 in my workstation. I would like
 to make sure  some issues before I make the upgrade.

 1.  Can I apply the previous stereo emitter (Purchased from Real D, Model
 #E-2) to 120HZ LCD? Although the company told me this emitter is not
 compatible with LCD, could some one tell me why? Is it true that the Nvidia
 3D vision is the only solution for the stereo in LCD?

 2. Nvidia supply two kinds of 3D emitters. One of them is 3D vision,
 while the other one is 3D vision pro.  Which one is sufficient for
 crystallographier user? (3D vision pro is much more expensive than 3D
 vision)
 It seems that 3D vision is for home user and powered by the Nvidia
 GeForce  series graphic cards. While 3D vision pro is for professional
 user and powered by Nvidia Quardro series graphic card .

 3. It looks that the Nvidia 3D glasses are very compact. Is it comfortable
 for someone like me already with eyeglasses?


 Thanks

 Yu
 --
 Yu Zhang
 HHMI associate
 Waksman Institute, Rutgers University
 190 Frelinghuysen Rd.
 Piscataway, NJ, 08904





 --
 Jim Fairman, Ph D.
 Post-Doctoral Fellow
 National Institutes of Health - NIDDK
 The Buchanan Lab http://www-mslmb.niddk.nih.gov/buchanan/index.html
 Lab: 1-301-594-9229
 E-mail: fairman@gmail.com james.fair...@nih.gov




-- 
Yu Zhang
HHMI associate
Waksman Institute, Rutgers University
190 Frelinghuysen Rd.
Piscataway, NJ, 08904


Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-06 Thread Nian Huang
Check pymolwiki for the full description of setup. It should work for coot
too.
http://www.pymolwiki.org/index.php/Stereo_3D_Display_Options

Nian

On Fri, May 6, 2011 at 10:27 AM, zhang yu ccp4f...@gmail.com wrote:

 Dear colleagues,

 Sorry to present the stereo issue to the board again.

 Since my old SGI CRT monitor only has 75 HZ refresh rate, the flickering in
 stereo mode bothered me a lot.  Recently, I want to update my old CRT to 120
 HZ LCD.  I have a Nvidia Quadro FX3800 in my workstation. I would like to
 make sure  some issues before I make the upgrade.

 1.  Can I apply the previous stereo emitter (Purchased from Real D, Model
 #E-2) to 120HZ LCD? Although the company told me this emitter is not
 compatible with LCD, could some one tell me why? Is it true that the Nvidia
 3D vision is the only solution for the stereo in LCD?

 2. Nvidia supply two kinds of 3D emitters. One of them is 3D vision,
 while the other one is 3D vision pro.  Which one is sufficient for
 crystallographier user? (3D vision pro is much more expensive than 3D
 vision)
 It seems that 3D vision is for home user and powered by the Nvidia
 GeForce  series graphic cards. While 3D vision pro is for professional
 user and powered by Nvidia Quardro series graphic card .

 3. It looks that the Nvidia 3D glasses are very compact. Is it comfortable
 for someone like me already with eyeglasses?


 Thanks

 Yu
 --
 Yu Zhang
 HHMI associate
 Waksman Institute, Rutgers University
 190 Frelinghuysen Rd.
 Piscataway, NJ, 08904





Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-06 Thread Dave Roberts
I think all major programs used by crystallographers use Zalman option. I know 
that coot and chimera do as does the version of pymol I have running (which is 
old). I don't know about other programs, but I don't know why not. 

Dave

Sent from my iPhone

On May 6, 2011, at 12:04 PM, zhang yu ccp4f...@gmail.com wrote:

 Dave, thanks.
 
 There is an option for Zalman stereo in Coot. Could Zalman stereo also 
 display properly in Pymol?
 
 Yu
 
 2011/5/6 Dave Roberts drobe...@depauw.edu
 I'm very happy with Zalman passive stereo. No hardware requirements beyond 
 Zalman monitor. Monitors cost $500ish for 21 and 700ish for 24. Any video 
 card, any software. Glasses are the same as movie glasses ($2 per pair), no 
 batteries, no flicker. Very nice really.
 
 Dave
 
 Sent from my iPhone
 
 On May 6, 2011, at 11:27 AM, zhang yu ccp4f...@gmail.com wrote:
 
  Dear colleagues,
 
  Sorry to present the stereo issue to the board again.
 
  Since my old SGI CRT monitor only has 75 HZ refresh rate, the flickering in 
  stereo mode bothered me a lot.  Recently, I want to update my old CRT to 
  120 HZ LCD.  I have a Nvidia Quadro FX3800 in my workstation. I would 
  like to make sure  some issues before I make the upgrade.
 
  1.  Can I apply the previous stereo emitter (Purchased from Real D, Model 
  #E-2) to 120HZ LCD? Although the company told me this emitter is not 
  compatible with LCD, could some one tell me why? Is it true that the 
  Nvidia 3D vision is the only solution for the stereo in LCD?
 
  2. Nvidia supply two kinds of 3D emitters. One of them is 3D vision, 
  while the other one is 3D vision pro.  Which one is sufficient for 
  crystallographier user? (3D vision pro is much more expensive than 3D 
  vision)
  It seems that 3D vision is for home user and powered by the Nvidia 
  GeForce  series graphic cards. While 3D vision pro is for professional 
  user and powered by Nvidia Quardro series graphic card .
 
  3. It looks that the Nvidia 3D glasses are very compact. Is it comfortable 
  for someone like me already with eyeglasses?
 
 
  Thanks
 
  Yu
  --
  Yu Zhang
  HHMI associate
  Waksman Institute, Rutgers University
  190 Frelinghuysen Rd.
  Piscataway, NJ, 08904
 
 
 
 
 
 -- 
 Yu Zhang
 HHMI associate 
 Waksman Institute, Rutgers University
 190 Frelinghuysen Rd.
 Piscataway, NJ, 08904
 
 


Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-06 Thread Eric Bennett
We recently had issues setting up a 3D projector and have tried lots of 
combinations of monitors, drivers, cards, glasses, etc.  The answer seems to be 
that interchangeability is very complicated and you won't know unless you try 
it.

 For example, with the last version of the Nvidia driver I tested, the driver 
refused to put out an Nvidia 3D Vision sync signal (stereo 10 in xorg.conf) 
unless there was a 3D capable LCD attached.  I don't know of any technical 
reason the Nvidia 3D Vision couldn't be used with a CRT but Nvidia has 
apparently chosen to disable it (or at least make it hard to enable) in the 
Linux driver.

Going the other direction, using RealD with and LCD system, it might be 
possible but you probably have to match your RealD emitter with RealD glasses.  
Older CrystalEyes glasses (CE3 and earlier) generally do not work with LCD 
monitors because of the polarization in the glasses.  We recently got some CE4 
glasses and they don't seem to have that problem although in practice we are 
using them with a projector, not LCD monitors.  But I don't really like the 
CE4's, there is too much of my field of vision under the glasses that they 
don't cover.

We've observed some really weird configurations that appear to mostly work, 
such as plugging in a RealD emitter and glasses when the driver is configured 
to output a signal for Nvidia 3D Vision (stereo 10 option under Linux).  You 
don't say whether you are using Windows or Linux and there may be variations in 
the drivers, variations by card, etc.  Regarding card to card variations, we've 
observed 3D setups in conference rooms with multiple emitters where some Nvidia 
cards happily drive multiple emitters with particular splitters  boosters, but 
other Nvidia cards don't.  

The bottom line is if you mix hardware you might have problems and vendors are 
unlikely to help you.  If you have CE4 glasses already, you can try it with an 
LCD and it may work.  Otherwise, if you have to buy new glasses (ie, you have 
CE3 or older), you might as well get the Nvidia package with the emitter 
included.  3D Vision Pro uses the 2.4 GHz band instead of IR to transmit the 
sync signal so if you were setting up a conference room in theory the Pro 
version might be less likely to leave dead zones in the conference room.  For a 
single user workstation it's very unlikely that you would get any benefit.

Just to muddy the waters a bit, I have not seen a working 120 Hz stereo setup 
working on the Acer GD235 monitor.  We have a bunch of them set up, and we put 
a 120 Hz mode line in xorg.conf.  If you ask X11 it says it's running at 120.  
But if you ask the Nvidia driver or the monitor, it reports 100 Hz instead, and 
visually there is enough flickering that the monitor and the driver seem to 
have the correct number.  I'm curious if anyone else here has looked in detail 
to make sure their Acer-based system is running at 120 and found that it is 
actually doing what people claim it can do.  I find the 100 Hz LCD flicker 
annoying over long periods so I am still a neanderthal CRT user.  My coworkers 
were convinced their LCD systems were running at 120, when they were actually 
only running at 100.  I'm not sure if this is a driver problem or a monitor 
problem.

-Eric


On May 6, 2011, at 11:27 AM, zhang yu wrote:

 Dear colleagues, 
 
 Sorry to present the stereo issue to the board again.
 
 Since my old SGI CRT monitor only has 75 HZ refresh rate, the flickering in 
 stereo mode bothered me a lot.  Recently, I want to update my old CRT to 120 
 HZ LCD.  I have a Nvidia Quadro FX3800 in my workstation. I would like to 
 make sure  some issues before I make the upgrade.
 
 1.  Can I apply the previous stereo emitter (Purchased from Real D, Model 
 #E-2) to 120HZ LCD? Although the company told me this emitter is not 
 compatible with LCD, could some one tell me why? Is it true that the Nvidia 
 3D vision is the only solution for the stereo in LCD?
 
 2. Nvidia supply two kinds of 3D emitters. One of them is 3D vision, while 
 the other one is 3D vision pro.  Which one is sufficient for 
 crystallographier user? (3D vision pro is much more expensive than 3D 
 vision) 
 It seems that 3D vision is for home user and powered by the Nvidia GeForce 
  series graphic cards. While 3D vision pro is for professional user and 
 powered by Nvidia Quardro series graphic card .   

 3. It looks that the Nvidia 3D glasses are very compact. Is it comfortable 
 for someone like me already with eyeglasses?
 
 
 Thanks
 
 Yu
 -- 
 Yu Zhang
 HHMI associate 
 Waksman Institute, Rutgers University
 190 Frelinghuysen Rd.
 Piscataway, NJ, 08904