[ccp4bb] Postdoctoral position at the University of Liverpool: De Novo phasing using long X-ray wavelengths

2008-11-06 Thread Michael Hough
Postdoctoral position available in the School of Biological Sciences,  
University of Liverpool


DE NOVO PHASING USING LONG X-RAY WAVELENGTHS



Salary: £30,594 pa

Duration: 1 year initially

Closing Date: 26 November 2008

Start date: Immediately available



Sulphur anomalous scattering is a large and relatively untapped  
resource for use in de novo protein structure determination but  
routine use of this ‘long wavelength’ phasing method is far from  
established. We are working among others with the University of  
Georgia (USA) and SER-CAT at the Advanced Photon Source in Chicago to  
develop long wavelength phasing as a method for routine data  
collection, processing and structure determination at synchrotron  
radiation beamlines. The objective is to make long wavelength SAD  
phasing no more difficult to achieve for structural biologists than  
Se MAD, which is already well established as a routine high- 
throughput approach for structure determination.




The project is a collaboration between scientists (Professor Samar  
Hasnain and Dr Richard Strange) in the Molecular Biophysics Group at  
the School of Biological Sciences. The experimental programme, from  
e.g. crystal optimisation to selection of wavelength, absorption  
corrections to structure solution using multiple crystals, will be  
performed at the new UK Synchrotron Source (Diamond) where the  
Science and Technology Facilities Council has recently announced  
funding for a dedicated beamline for long wavelength phasing as one  
of the Phase III beamlines, at APS,


Argonne, USA and SPring-8 in Japan.



For additional information on the group’s activities, please visit  
www.biophysics.liv.ac.uk.




Informal enquiries to Professor S Hasnain,  
email:[EMAIL PROTECTED] or


Dr. R. Strange, email: [EMAIL PROTECTED]



Submitting Applications

Applications may be submitted by e-mail to [EMAIL PROTECTED] or by post  
or in person to: The Director of Human Resources (Recruitment), The  
University of Liverpool, Foundation Building, 765 Brownlow Hill,  
Liverpool L69 7ZX




Application Procedure

Applications should comprise:

*A completed applicant information form

* A copy of your full curriculum vitae

*A statement indicating the reasons for applying for this post and  
how your training and experience is relevant.




References

• Structure determination of a 16.8kDa copper protein at 2.1Å  
resolution using anomalous


scattering data with direct Methods, I. Harvey, Q. Hao, E. Duke, J.  
Ingledew and S. S. Hasnain,


Acta. Crystallogr. D: Biological Crystallography 54, 629-635 (1998)

• Is single wavelength anamolous scattering sufficient for solving  
phases? A comparison of different


methods for a 2.1Å structure solution. Y. Liu, I. Harvey, Y. Gu., C.  
Zhang, Y. Z. He, H. F. Fan, S.


S. Hasnain, Q. Hao Acta. Cryst.D., 55,1620-1622 (1999).

• Cianci et. al. Journal of Synchrotron Radiation 12, 455-466

[ccp4bb] differentiating cation and anions in high resolution structures

2008-11-06 Thread Kristof Van Hecke

Dear all,

I'm looking for some means (literature references,.. possible  
programs) to differentiate between cations (Na+), anions (e.g. Cl-)  
and water molecules in high resolution protein/DNA structures, based  
on B-factors, distances, coordination, etc..
Does anyone has got an idea of what's the best strategy to follow in  
these cases..?


many thanks

Kristof

--
Kristof Van Hecke, PhD
Biomoleculaire Architectuur
Celestijnenlaan 200 F
B-3001 Heverlee (Leuven)
Tel: +32(0)16327477
--





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[ccp4bb] Nucplot manual

2008-11-06 Thread Raja Dey
Dear Friends,
  Can anyone provide me the manual of nucplot as .pdf or 
.doc file?
Thanking you in advance...

 Raja 



  Add more friends to your messenger and enjoy! Go to 
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[ccp4bb] Opinions on Crystal Imaging Systems

2008-11-06 Thread Klaus Futterer

Dear CCP4BB community,

We are looking into acquiring a crystal imaging system. I'm keen to  
learn about personal preferences and experiences, perhaps with some  
technical performance specifics. Points of interest include (but are  
not limited to)


* quality of images (focussing depth, lighting, ...)
* reliability
* service needs and serviceability
* drop localisation

Could I suggest to forward replies directly to [EMAIL PROTECTED]  
rather than to the BB so as not to upset any particular supplier  
unnecessarily?

(I promise to generate a posting-suitable summary).

Many thanks,

Klaus




-

Klaus Fütterer, Ph.D.

School of Biosciences P: +44-(0)-121-414 5895
University of Birmingham  F: +44-(0)-121-414 5925
Edgbaston E: [EMAIL PROTECTED]
Birmingham, B15 2TT, UK   W: www.biochemistry.bham.ac.uk/klaus/
-


Re: [ccp4bb] Nucplot manual

2008-11-06 Thread Tim Gruene

Hello,

I could access the site 
http://www.biochem.ucl.ac.uk/bsm/nucplot/contents.html

without problems. Maybe it was down for some time?

Tim

--
Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen

GPG Key ID = A46BEE1A


On Thu, 6 Nov 2008, Raja Dey wrote:


Dear Friends,
 Can anyone provide me the manual of nucplot as .pdf or 
.doc file?
Thanking you in advance...

Raja



 Add more friends to your messenger and enjoy! Go to 
http://messenger.yahoo.com/invite/