Re: [CMake] CMake Reports Incorrect HDF5 Libraries on OS X after 3.6.0 Upgrade

2016-07-14 Thread Chuck Atkins 
Hi Brennan,

We also just got the Homebrew cmake formula updated to explicitly include
the patch.  See https://github.com/Homebrew/homebrew-core/pull/2968

- Chuck

On Wed, Jul 13, 2016 at 11:10 PM, Breannan Smith 
wrote:

> Rad, I can verify that the issue is resolved in the git repo if anyone
> else is running into the bug. Thanks!
>
> On Tue, Jul 12, 2016 at 5:12 AM, Robert Maynard
>  wrote:
> > Hi Breannan,
> >
> > You can track the status of the fix at
> > https://gitlab.kitware.com/cmake/cmake/merge_requests/34
> >
> > On Mon, Jul 11, 2016 at 8:52 AM, Robert Maynard
> >  wrote:
> >> Hi Breannan,
> >>
> >> I am able to reproduce this and will start digging into why this is
> occurring.
> >>
> >> On Sun, Jul 10, 2016 at 6:34 PM, Breannan Smith <
> smithbrean...@gmail.com> wrote:
> >>> After upgrading to CMake 3.6.0 from 3.5.2, CMake fails to find HDF5 on
> OS X.
> >>>
> >>> With 3.5.2, find_package(HDF5 REQUIRED COMPONENTS C) reports the
> >>> following for HDF5_LIBRARIES. Note the presences of libhdf5.dylib, in
> >>> this list:
> >>>
> >>>
> /usr/local/Cellar/hdf5/1.8.16_1/lib/libhdf5.dylib;/usr/local/opt/szip/lib/libsz.dylib;/usr/lib/libz.dylib;/usr/lib/libdl.dylib;/usr/lib/libm.dylib
> >>>
> >>> With 3.6.0, the same find_package command gives the following
> >>> HDF5_LIBRARIES. Notice that libhdf5.dylib is not even present:
> >>>
> >>>
> /usr/local/lib/libsz.dylib;/usr/lib/libz.dylib;/usr/lib/libdl.dylib;/usr/lib/libm.dylib
> >>>
> >>> The contents of the HDF5_LIBRARIES and HDF5_C_LIBRARIES are the same
> >>> under 3.6.0. Interestingly, the FindHDF5.cmake module does not report
> >>> a failure under 3.6.0 even though it fails to locate the HDF5 library.
> >>>
> >>> I did not see any changes to FindHDF5.cmake listed under the 3.6
> >>> release notes [1], but diffing the module files there were extensive
> >>> edits made.
> >>>
> >>> Has anyone else run into this issue or found a fix? Thank you!
> >>>
> >>> [1] https://cmake.org/cmake/help/v3.6/release/3.6.html
> >>> --
> >>>
> >>> Powered by www.kitware.com
> >>>
> >>> Please keep messages on-topic and check the CMake FAQ at:
> http://www.cmake.org/Wiki/CMake_FAQ
> >>>
> >>> Kitware offers various services to support the CMake community. For
> more information on each offering, please visit:
> >>>
> >>> CMake Support: http://cmake.org/cmake/help/support.html
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> >>>
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Re: [CMake] CMake Reports Incorrect HDF5 Libraries on OS X after 3.6.0 Upgrade

2016-07-13 Thread Breannan Smith 
Rad, I can verify that the issue is resolved in the git repo if anyone
else is running into the bug. Thanks!

On Tue, Jul 12, 2016 at 5:12 AM, Robert Maynard
 wrote:
> Hi Breannan,
>
> You can track the status of the fix at
> https://gitlab.kitware.com/cmake/cmake/merge_requests/34
>
> On Mon, Jul 11, 2016 at 8:52 AM, Robert Maynard
>  wrote:
>> Hi Breannan,
>>
>> I am able to reproduce this and will start digging into why this is 
>> occurring.
>>
>> On Sun, Jul 10, 2016 at 6:34 PM, Breannan Smith  
>> wrote:
>>> After upgrading to CMake 3.6.0 from 3.5.2, CMake fails to find HDF5 on OS X.
>>>
>>> With 3.5.2, find_package(HDF5 REQUIRED COMPONENTS C) reports the
>>> following for HDF5_LIBRARIES. Note the presences of libhdf5.dylib, in
>>> this list:
>>>
>>> /usr/local/Cellar/hdf5/1.8.16_1/lib/libhdf5.dylib;/usr/local/opt/szip/lib/libsz.dylib;/usr/lib/libz.dylib;/usr/lib/libdl.dylib;/usr/lib/libm.dylib
>>>
>>> With 3.6.0, the same find_package command gives the following
>>> HDF5_LIBRARIES. Notice that libhdf5.dylib is not even present:
>>>
>>> /usr/local/lib/libsz.dylib;/usr/lib/libz.dylib;/usr/lib/libdl.dylib;/usr/lib/libm.dylib
>>>
>>> The contents of the HDF5_LIBRARIES and HDF5_C_LIBRARIES are the same
>>> under 3.6.0. Interestingly, the FindHDF5.cmake module does not report
>>> a failure under 3.6.0 even though it fails to locate the HDF5 library.
>>>
>>> I did not see any changes to FindHDF5.cmake listed under the 3.6
>>> release notes [1], but diffing the module files there were extensive
>>> edits made.
>>>
>>> Has anyone else run into this issue or found a fix? Thank you!
>>>
>>> [1] https://cmake.org/cmake/help/v3.6/release/3.6.html
>>> --
>>>
>>> Powered by www.kitware.com
>>>
>>> Please keep messages on-topic and check the CMake FAQ at: 
>>> http://www.cmake.org/Wiki/CMake_FAQ
>>>
>>> Kitware offers various services to support the CMake community. For more 
>>> information on each offering, please visit:
>>>
>>> CMake Support: http://cmake.org/cmake/help/support.html
>>> CMake Consulting: http://cmake.org/cmake/help/consulting.html
>>> CMake Training Courses: http://cmake.org/cmake/help/training.html
>>>
>>> Visit other Kitware open-source projects at 
>>> http://www.kitware.com/opensource/opensource.html
>>>
>>> Follow this link to subscribe/unsubscribe:
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-- 

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Re: [CMake] CMake Reports Incorrect HDF5 Libraries on OS X after 3.6.0 Upgrade

2016-07-12 Thread Robert Maynard 
Hi Breannan,

You can track the status of the fix at
https://gitlab.kitware.com/cmake/cmake/merge_requests/34

On Mon, Jul 11, 2016 at 8:52 AM, Robert Maynard
 wrote:
> Hi Breannan,
>
> I am able to reproduce this and will start digging into why this is occurring.
>
> On Sun, Jul 10, 2016 at 6:34 PM, Breannan Smith  
> wrote:
>> After upgrading to CMake 3.6.0 from 3.5.2, CMake fails to find HDF5 on OS X.
>>
>> With 3.5.2, find_package(HDF5 REQUIRED COMPONENTS C) reports the
>> following for HDF5_LIBRARIES. Note the presences of libhdf5.dylib, in
>> this list:
>>
>> /usr/local/Cellar/hdf5/1.8.16_1/lib/libhdf5.dylib;/usr/local/opt/szip/lib/libsz.dylib;/usr/lib/libz.dylib;/usr/lib/libdl.dylib;/usr/lib/libm.dylib
>>
>> With 3.6.0, the same find_package command gives the following
>> HDF5_LIBRARIES. Notice that libhdf5.dylib is not even present:
>>
>> /usr/local/lib/libsz.dylib;/usr/lib/libz.dylib;/usr/lib/libdl.dylib;/usr/lib/libm.dylib
>>
>> The contents of the HDF5_LIBRARIES and HDF5_C_LIBRARIES are the same
>> under 3.6.0. Interestingly, the FindHDF5.cmake module does not report
>> a failure under 3.6.0 even though it fails to locate the HDF5 library.
>>
>> I did not see any changes to FindHDF5.cmake listed under the 3.6
>> release notes [1], but diffing the module files there were extensive
>> edits made.
>>
>> Has anyone else run into this issue or found a fix? Thank you!
>>
>> [1] https://cmake.org/cmake/help/v3.6/release/3.6.html
>> --
>>
>> Powered by www.kitware.com
>>
>> Please keep messages on-topic and check the CMake FAQ at: 
>> http://www.cmake.org/Wiki/CMake_FAQ
>>
>> Kitware offers various services to support the CMake community. For more 
>> information on each offering, please visit:
>>
>> CMake Support: http://cmake.org/cmake/help/support.html
>> CMake Consulting: http://cmake.org/cmake/help/consulting.html
>> CMake Training Courses: http://cmake.org/cmake/help/training.html
>>
>> Visit other Kitware open-source projects at 
>> http://www.kitware.com/opensource/opensource.html
>>
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>> http://public.kitware.com/mailman/listinfo/cmake
-- 

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Re: [CMake] CMake Reports Incorrect HDF5 Libraries on OS X after 3.6.0 Upgrade

2016-07-11 Thread Robert Maynard 
Hi Breannan,

I am able to reproduce this and will start digging into why this is occurring.

On Sun, Jul 10, 2016 at 6:34 PM, Breannan Smith  wrote:
> After upgrading to CMake 3.6.0 from 3.5.2, CMake fails to find HDF5 on OS X.
>
> With 3.5.2, find_package(HDF5 REQUIRED COMPONENTS C) reports the
> following for HDF5_LIBRARIES. Note the presences of libhdf5.dylib, in
> this list:
>
> /usr/local/Cellar/hdf5/1.8.16_1/lib/libhdf5.dylib;/usr/local/opt/szip/lib/libsz.dylib;/usr/lib/libz.dylib;/usr/lib/libdl.dylib;/usr/lib/libm.dylib
>
> With 3.6.0, the same find_package command gives the following
> HDF5_LIBRARIES. Notice that libhdf5.dylib is not even present:
>
> /usr/local/lib/libsz.dylib;/usr/lib/libz.dylib;/usr/lib/libdl.dylib;/usr/lib/libm.dylib
>
> The contents of the HDF5_LIBRARIES and HDF5_C_LIBRARIES are the same
> under 3.6.0. Interestingly, the FindHDF5.cmake module does not report
> a failure under 3.6.0 even though it fails to locate the HDF5 library.
>
> I did not see any changes to FindHDF5.cmake listed under the 3.6
> release notes [1], but diffing the module files there were extensive
> edits made.
>
> Has anyone else run into this issue or found a fix? Thank you!
>
> [1] https://cmake.org/cmake/help/v3.6/release/3.6.html
> --
>
> Powered by www.kitware.com
>
> Please keep messages on-topic and check the CMake FAQ at: 
> http://www.cmake.org/Wiki/CMake_FAQ
>
> Kitware offers various services to support the CMake community. For more 
> information on each offering, please visit:
>
> CMake Support: http://cmake.org/cmake/help/support.html
> CMake Consulting: http://cmake.org/cmake/help/consulting.html
> CMake Training Courses: http://cmake.org/cmake/help/training.html
>
> Visit other Kitware open-source projects at 
> http://www.kitware.com/opensource/opensource.html
>
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[CMake] CMake Reports Incorrect HDF5 Libraries on OS X after 3.6.0 Upgrade

2016-07-10 Thread Breannan Smith 
After upgrading to CMake 3.6.0 from 3.5.2, CMake fails to find HDF5 on OS X.

With 3.5.2, find_package(HDF5 REQUIRED COMPONENTS C) reports the
following for HDF5_LIBRARIES. Note the presences of libhdf5.dylib, in
this list:

/usr/local/Cellar/hdf5/1.8.16_1/lib/libhdf5.dylib;/usr/local/opt/szip/lib/libsz.dylib;/usr/lib/libz.dylib;/usr/lib/libdl.dylib;/usr/lib/libm.dylib

With 3.6.0, the same find_package command gives the following
HDF5_LIBRARIES. Notice that libhdf5.dylib is not even present:

/usr/local/lib/libsz.dylib;/usr/lib/libz.dylib;/usr/lib/libdl.dylib;/usr/lib/libm.dylib

The contents of the HDF5_LIBRARIES and HDF5_C_LIBRARIES are the same
under 3.6.0. Interestingly, the FindHDF5.cmake module does not report
a failure under 3.6.0 even though it fails to locate the HDF5 library.

I did not see any changes to FindHDF5.cmake listed under the 3.6
release notes [1], but diffing the module files there were extensive
edits made.

Has anyone else run into this issue or found a fix? Thank you!

[1] https://cmake.org/cmake/help/v3.6/release/3.6.html
-- 

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