[jira] [Created] (BEAM-3857) Dynamic output support for python

2018-03-14 Thread Eila Arich-Landkof (JIRA)
Eila Arich-Landkof created BEAM-3857:


 Summary: Dynamic output support for python
 Key: BEAM-3857
 URL: https://issues.apache.org/jira/browse/BEAM-3857
 Project: Beam
  Issue Type: New Feature
  Components: io-ideas, sdk-py-core
Reporter: Eila Arich-Landkof
Assignee: Eugene Kirpichov


If possible, I would like to have a dynamic output support for python as 
available in Java

 



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[jira] [Commented] (BEAM-3850) I/O transform for HDH5 files with extension H5

2018-03-14 Thread Eila Arich-Landkof (JIRA)

[ 
https://issues.apache.org/jira/browse/BEAM-3850?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16399094#comment-16399094
 ] 

Eila Arich-Landkof commented on BEAM-3850:
--

Thanks. Also wanted to add that there is a Python API for reading / writing 
such files: h5py

[http://docs.h5py.org/en/latest/quick.html]

 

> I/O transform for HDH5 files with extension H5
> --
>
> Key: BEAM-3850
> URL: https://issues.apache.org/jira/browse/BEAM-3850
> Project: Beam
>  Issue Type: New Feature
>  Components: io-ideas, sdk-py-core
> Environment: Python (could be Java) if it does not work
>Reporter: Eila Arich-Landkof
>Assignee: Eugene Kirpichov
>Priority: Major
>
> Following the great summit today, I would like to ask for I/O transform for 
> H5 file in python. If impossible, Java will work as well.
> The HDF5 group is very accessible: [https://support.hdfgroup.org/HDF5/]
> Example for H5 file can be found @ Mount Sinai Maayan lab: 
> [https://amp.pharm.mssm.edu/archs4/download.html]
> I am using it as part of Oriel Research genomic and clinical processing 
> workflow.
> I am available for any question.
>  



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[jira] [Created] (BEAM-3850) I/O transform for HDH5 files with extension H5

2018-03-14 Thread Eila Arich-Landkof (JIRA)
Eila Arich-Landkof created BEAM-3850:


 Summary: I/O transform for HDH5 files with extension H5
 Key: BEAM-3850
 URL: https://issues.apache.org/jira/browse/BEAM-3850
 Project: Beam
  Issue Type: New Feature
  Components: io-ideas, sdk-py-core
 Environment: Python (could be Java) if it does not work
Reporter: Eila Arich-Landkof
Assignee: Eugene Kirpichov


Following the great summit today, I would like to ask for I/O transform for H5 
file in python. If impossible, Java will work as well.

The HDF5 group is very accessible: [https://support.hdfgroup.org/HDF5/]

Example for H5 file can be found @ Mount Sinai Maayan lab: 
[https://amp.pharm.mssm.edu/archs4/download.html]

I am using it as part of Oriel Research genomic and clinical processing 
workflow.

I am available for any question.

 



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