Re: [COOT] Hardware stereo setup help

2013-09-03 Thread mesters

Hi,

under linux, USB support will not work as far as I am informed. So, 
better to use the 3-pin for both operating systems.


Not sure the nvidia demo is a useful reference because it can send a 
HD-TV 1920 × 1080 pixel @ 24 Hz signal to the monitor (what monitor 
are you using and how is it connected, HDMI, DVI-D???).


Under windows, you have to set a few things in the nvidia system driver:
1) change monitor settings to advanced stereo
2) change 3d options to 3d opengl stereo with stereo activation on
You have to play a little around here.

Under Linux, you have to set a few things in the xorg.conf file by hand! 
To find out why it is not working, send us of the xorg.conf file the 
sections Monitor to Extentions. This will help to locate the problem.


- J. -


Am 02.09.13 23:59, schrieb David Schuller:
In addition to using STEREO mode 10, try adding this section to 
xorg.conf:


Section Extensions
Option Composite Disable
EndSection

Full xorg.conf file included at the bottom of this post.

On 09/02/13 11:52, Arnaud Basle wrote:

Dear Coot and Pymol users,

I have the same problem with both softwares so I thought I would send 
a joined message.


We recently acquired a quadro 4000 with a 3-pin connector and the 
NVIDIA 3D Vision 2 kit (suppose to be supported by NVIDIA on linux 
for openGL applications 
http://www.nvidia.com/object/quadro_pro_graphics_boards_linux.html)


I have inserted /etc/X11/xorg.conf in device section the following: 
option stereo 3 following instructions here 
(http://us.download.nvidia.com/XFree86/Linux-x86/310.40/README/xconfigoptions.html)


I am using Mint 13 (based on ubuntu) and the NVIDIA drivers are 319.32.

When stating pymol using the following: pymol -S -t 1, I get the 
following error message: Error: The requested stereo 3D 
visualization mode is not available.


Coot give me the following error when switching to hardware stereo: 
WARNING:: Can't enable stereo visual - falling back


so I guess I did not installed properly my drivers but I am stuck in 
what to try next. Any help from those of you who managed to get 
hardware stereo to work would be greatly appreciated (I am even 
willing to try a different linux flavour if need be).


I would like to add that the hardware works fine (at least the NVIDIA 
demo stuff) on windows 7 but even under windows i could not get 
pymol/coot to work. Both switch to stereo hardware and the display 
get blurry but the shutter glasses do not work...


Cheers,
Arnaud



  a working xorg.conf from Scientific Linux 6.x :

Section ServerLayout
Identifier Layout0
Screen  0  Screen0 0 0
InputDeviceKeyboard0 CoreKeyboard
InputDeviceMouse0 CorePointer
EndSection

Section Files
ModulePath   /usr/lib64/xorg/modules/extensions/nvidia
ModulePath   /usr/lib64/xorg/modules
FontPath /usr/share/fonts/default/Type1
EndSection

Section InputDevice

# generated from default
Identifier  Mouse0
Driver  mouse
OptionProtocol auto
OptionDevice /dev/input/mice
OptionEmulate3Buttons no
OptionZAxisMapping 4 5
EndSection

Section InputDevice

# generated from data in /etc/sysconfig/keyboard
Identifier  Keyboard0
Driver  kbd
OptionXkbLayout us
OptionXkbModel pc105
EndSection

Section Monitor
Identifier   Monitor0
VendorName   Planar
ModelNameSA2311W
HorizSync30.0 - 140.0
VertRefresh  56.0 - 120.0
OptionDPMS
EndSection

Section Device
Identifier  Device0
Driver  nvidia
VendorName  NVIDIA Corporation
EndSection

Section Screen
Identifier Screen0
Device Device0
MonitorMonitor0
DefaultDepth 24
Option Stereo 10
SubSection Display
Modes  1920x1080 1920x1080_120
Depth 24
EndSubSection
EndSection

Section Extensions
Option Composite Disable
EndSection

--





--

Dr. Jeroen R. Mesters

Gruppenleiter Strukturelle Neurobiologie und Kristallogenese
Institut für Biochemie
Universität zu Lübeck
Zentrum für Medizinische Struktur- und Zellbiologie
Ratzeburger Allee 160, D-23538 Lübeck
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Fax: +49-451-5004068
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--
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lot of genius and a lot of courage to move in the opposite direction 
(Albert Einstein, 1879-1955)


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which will not - speak then to me(Macbeth)

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the 

Re: [COOT] Hardware stereo setup help [SOLVED]

2013-09-03 Thread David Schuller

On 09/03/13 03:08, Arnaud Basle wrote:
 Somehow I managed to get the emitter going to error and glowing red. 
The problem was solved by rebooting into windows and back to linux.


The emitter is recognized during bootup. If you plug it in after bootup, 
it won't work.


--
===
All Things Serve the Beam
===
   David J. Schuller
   modern man in a post-modern world
   MacCHESS, Cornell University
   schul...@cornell.edu



Re: [COOT] Hardware stereo setup help

2013-09-02 Thread David Schuller

In addition to using STEREO mode 10, try adding this section to xorg.conf:

Section Extensions
Option Composite Disable
EndSection

Full xorg.conf file included at the bottom of this post.

On 09/02/13 11:52, Arnaud Basle wrote:

Dear Coot and Pymol users,

I have the same problem with both softwares so I thought I would send 
a joined message.


We recently acquired a quadro 4000 with a 3-pin connector and the 
NVIDIA 3D Vision 2 kit (suppose to be supported by NVIDIA on linux for 
openGL applications 
http://www.nvidia.com/object/quadro_pro_graphics_boards_linux.html)


I have inserted /etc/X11/xorg.conf in device section the following: 
option stereo 3 following instructions here 
(http://us.download.nvidia.com/XFree86/Linux-x86/310.40/README/xconfigoptions.html)


I am using Mint 13 (based on ubuntu) and the NVIDIA drivers are 319.32.

When stating pymol using the following: pymol -S -t 1, I get the 
following error message: Error: The requested stereo 3D visualization 
mode is not available.


Coot give me the following error when switching to hardware stereo: 
WARNING:: Can't enable stereo visual - falling back


so I guess I did not installed properly my drivers but I am stuck in 
what to try next. Any help from those of you who managed to get 
hardware stereo to work would be greatly appreciated (I am even 
willing to try a different linux flavour if need be).


I would like to add that the hardware works fine (at least the NVIDIA 
demo stuff) on windows 7 but even under windows i could not get 
pymol/coot to work. Both switch to stereo hardware and the display get 
blurry but the shutter glasses do not work...


Cheers,
Arnaud



  a working xorg.conf from Scientific Linux 6.x :

Section ServerLayout
Identifier Layout0
Screen  0  Screen0 0 0
InputDeviceKeyboard0 CoreKeyboard
InputDeviceMouse0 CorePointer
EndSection

Section Files
ModulePath   /usr/lib64/xorg/modules/extensions/nvidia
ModulePath   /usr/lib64/xorg/modules
FontPath /usr/share/fonts/default/Type1
EndSection

Section InputDevice

# generated from default
Identifier  Mouse0
Driver  mouse
OptionProtocol auto
OptionDevice /dev/input/mice
OptionEmulate3Buttons no
OptionZAxisMapping 4 5
EndSection

Section InputDevice

# generated from data in /etc/sysconfig/keyboard
Identifier  Keyboard0
Driver  kbd
OptionXkbLayout us
OptionXkbModel pc105
EndSection

Section Monitor
Identifier   Monitor0
VendorName   Planar
ModelNameSA2311W
HorizSync30.0 - 140.0
VertRefresh  56.0 - 120.0
OptionDPMS
EndSection

Section Device
Identifier  Device0
Driver  nvidia
VendorName  NVIDIA Corporation
EndSection

Section Screen
Identifier Screen0
Device Device0
MonitorMonitor0
DefaultDepth 24
Option Stereo 10
SubSection Display
Modes  1920x1080 1920x1080_120
Depth 24
EndSubSection
EndSection

Section Extensions
Option Composite Disable
EndSection

--


--
===
All Things Serve the Beam
===
   David J. Schuller
   modern man in a post-modern world
   MacCHESS, Cornell University
   schul...@cornell.edu