Dear Paul and Bill,
rev 2310 from fink works properly now on mac (intel) os 10.5.8
Thank you a lot for solving this problem so quickly (and heroically)!
Some issues, then.
When launching coot I get this error:
INFO:: loading preferences file /Users/mol/.coot-preferences/
coot_toolbuttons.py
Running python script /Users/mol/.coot-preferences/coot_toolbuttons.py
Traceback (most recent call last):
File "", line 1, in
File "/Users/mol/.coot-preferences/coot_toolbuttons.py", line 1,
in
coot_toolbar_button("Side-by-side/Mono",
"side_by_side_stereo_mono_toggle()", "stereo-view.svg")
NameError: name 'coot_toolbar_button' is not defined
and yes, my side-by-side/Mono button is gone (and today I'm unable to
find the way to add it back there or to add just any other user-
defined button as a matter of fact, but this is most probably because
I have less than half neuron awake)
Then, a debug warning, I put it here in case it may ring a bell
somewhere:
load "extensions.scm"
DEBUG:: in safe_python_command_with_return() pValue is 0x162f52c
DEBUG:: in safe_python_command_with_return() pValue is 0x162f52c
DEBUG:: in safe_python_command_with_return() pValue is 0x162f52c
DEBUG:: in safe_python_command_with_return() pValue is 0x162f52c
INFO:: loading preferences file /Users/mol/.coot-preferences/coot-
preferences.scm
Other issues:
* Residue Info window is not updated when ab alt-conformation is added
* If an alt-conf is added and then an auto-fit-rotamer, the
occupancies get mangled (for a two-conf case, one goes to 0.0
occupancy and the other to 1.0)
* The labels 'Maximum' and 'minimum distance to protein atoms' in the
'Find waters' dialog are swapped. Or, at least, Minimum is set to 3.40
and maximum to 2.20, which makes no sense to me (but see the neuronal
awakeness alert above)
And a good thing found in this version: bond parameters preferences
(width) is now taken into account!!!
Thanks again!
Miguel
Le 15 sept. 09 à 00:23, Paul Emsley a écrit :
>> On Sep 11, 2009, at 7:36 AM, Benda, Christian wrote:
>>
>> Dear Bill,
>> Thanks for your quick reply! I installed the new revision but
>> it doesn't seem to make a difference (to my problems). I guess
>> you're right and it's because I am still running 10.4 - think
>> it's time to upgrade to 10.6, finally!
>>
>> Again, many thanks and best regards,
William G. Scott wrote:
> Paul just pulled off a heroic fix (rev 2310). Please try that.
So the last couple of days have been a bit frustrating for me, but a
good deal of credit goes to Bill of course.
Anyway...
the time is approaching for a new point release. While there are
still a couple of issues on the list to be addressed, feedback on
the current pre-release would be appreciated. Mac users will need
Bill's latest and greatest, others can use the binaries on the pre-
release page:
http://www.biop.ox.ac.uk/coot/devel/build-info.html
If possible, please restrict your comments to issues in 0.6, not
missing features or features for 0.7 - there will be time for that
after 0.6 is out and working.
Thanks,
Paul.
--
This message has been scanned for viruses and
dangerous content by MailScanner, and is
believed to be clean.
--
Miguel Ortiz Lombardía
Architecture et Fonction des Macromolécules Biologiques (UMR6098)
CNRS, Universités d'Aix-Marseille I & II
Case 932
163 Avenue de Luminy
13288 Marseille cedex 9
France
Tel : +33(0) 491 82 55 93
Fax: +33(0) 491 26 67 20
e-mail: miguel.ortiz-lombar...@afmb.univ-mrs.fr
Web: http://www.pangea.org/mol/spip.php?rubrique2
--
This message has been scanned for viruses and
dangerous content by MailScanner, and is
believed to be clean.
