Re: [COOT] coot on MacOS

2023-09-01 Thread Kelvin Lau 
When Xquartz is installed it should be in the applications folder. Have you 
tried to reinstall it? It should open an installer gui and proceed normally.

--
Kelvin Lau
Protein production and structure core facility - PTPSP
EPFL SV PTECH PTPSP
AI 2146 (Bâtiment AI)
Station 19
CH-1015 Lausanne
Switzerland
Email: kelvin@epfl.ch
Phone: +41 21 69 34494

On 31 Aug 2023, at 22:52, Andrea Smith  wrote:

 P.S. Found this in the log file from Cloud:

dyld: Library not loaded: /usr/X11/lib/libpixman-1.0.dylib
  Referenced from: /Applications/ccp4-8.0/lib/libcairo.2.dylib
  Reason: Incompatible library version: libcairo.2.dylib requires version 
35.0.0 or later, but libpixman-1.0.dylib provides version 0.0.0
/Applications/ccp4-8.0/coot_py2/bin/coot: line 272:  3147 Abort trap: 6 
  $coot_bin "$@"
ERROR: In procedure dynamic-link:
ERROR: file: "libguilegtk-2.0", message: "file not found"
 *** error running coot: Error in command.call
Return code: 34304





On Thursday, August 31, 2023 22:18 CEST, Andrea Smith 
 wrote:

Dear all,

I have macOS Big Sur version 11.6.8 (first time Mac user) and I wanted to get 
CCP4. So I went to CCP4 download pages, there I read I need XQuartz, so I 
downloaded XQuartz 2.8.3. Installed. Then I downloaded the CCP4 Package 
Manager. Installed.

Tried to run CCP4 Cloud. All good until I wanted to open Coot which failed on 
the Cloud. So I tried to open Coot directly from Applications, but Coot doesn't 
open. The XQuartz is not in the Applications (?).

What am I doing wrong? How do I find out where is the problem?

Help will be appreciated. Thank you, best,
Andrea


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Re: [COOT] coot on MacOS

2023-09-01 Thread Paul Emsley 


I don't know much about CCP4-built binaries on macOS. I do know that one 
is supposed to reinstall XQuartz after updating the OS.



Paul.



On 31/08/2023 21:52, Andrea Smith wrote:

P.S. Found this in the log file from Cloud:

dyld: Library not loaded: /usr/X11/lib/libpixman-1.0.dylib
  Referenced from: /Applications/ccp4-8.0/lib/libcairo.2.dylib
  Reason: Incompatible library version: libcairo.2.dylib requires 
version 35.0.0 or later, but libpixman-1.0.dylib provides version 0.0.0
/Applications/ccp4-8.0/coot_py2/bin/coot: line 272:  3147 Abort trap: 
6   $coot_bin "$@"

ERROR: In procedure dynamic-link:
ERROR: file: "libguilegtk-2.0", message: "file not found"
 *** error running coot: Error in command.call
Return code: 34304





On Thursday, August 31, 2023 22:18 CEST, Andrea Smith 
 wrote:

Dear all,

I have macOS Big Sur version 11.6.8 (first time Mac user) and I 
wanted to get CCP4. So I went to CCP4 download pages, there I read I 
need XQuartz, so I downloaded XQuartz 2.8.3. Installed. Then I 
downloaded the CCP4 Package Manager. Installed.


Tried to run CCP4 Cloud. All good until I wanted to open Coot which 
failed on the Cloud. So I tried to open Coot directly from 
Applications, but Coot doesn't open. The XQuartz is not in the 
Applications (?).


What am I doing wrong? How do I find out where is the problem?

Help will be appreciated. Thank you, best,
Andrea


To unsubscribe from the COOT list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT=1 







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Re: [COOT] coot on MacOS

2023-08-31 Thread Andrea Smith 

P.S. Found this in the log file from Cloud:

dyld: Library not loaded: /usr/X11/lib/libpixman-1.0.dylib
  Referenced from: /Applications/ccp4-8.0/lib/libcairo.2.dylib
  Reason: Incompatible library version: libcairo.2.dylib requires version 
35.0.0 or later, but libpixman-1.0.dylib provides version 0.0.0
/Applications/ccp4-8.0/coot_py2/bin/coot: line 272:  3147 Abort trap: 6 
  $coot_bin "$@"
ERROR: In procedure dynamic-link:
ERROR: file: "libguilegtk-2.0", message: "file not found"
 *** error running coot: Error in command.call
Return code: 34304





On Thursday, August 31, 2023 22:18 CEST, Andrea Smith 
 wrote:
 Dear all,

I have macOS Big Sur version 11.6.8 (first time Mac user) and I wanted to get 
CCP4. So I went to CCP4 download pages, there I read I need XQuartz, so I 
downloaded XQuartz 2.8.3. Installed. Then I downloaded the CCP4 Package 
Manager. Installed.

Tried to run CCP4 Cloud. All good until I wanted to open Coot which failed on 
the Cloud. So I tried to open Coot directly from Applications, but Coot doesn't 
open. The XQuartz is not in the Applications (?).

What am I doing wrong? How do I find out where is the problem?

Help will be appreciated. Thank you, best,
Andrea__

To unsubscribe from the COOT list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT=1



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[COOT] coot on MacOS

2023-08-31 Thread Andrea Smith 

Dear all,

I have macOS Big Sur version 11.6.8 (first time Mac user) and I wanted to get 
CCP4. So I went to CCP4 download pages, there I read I need XQuartz, so I 
downloaded XQuartz 2.8.3. Installed. Then I downloaded the CCP4 Package 
Manager. Installed.

Tried to run CCP4 Cloud. All good until I wanted to open Coot which failed on 
the Cloud. So I tried to open Coot directly from Applications, but Coot doesn't 
open. The XQuartz is not in the Applications (?).

What am I doing wrong? How do I find out where is the problem?

Help will be appreciated. Thank you, best,
Andrea



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https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT=1

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