Re: [COOT] ccp4mg
Adding to the coefficient of irony, this works rather well with pymol. On Tue, September 15, 2009 10:34 am, Wu, Zhongren wrote: > Paul, > Thank you for the mail. It is indeed a problem in the PDB format, > generated at the Yale server. The segID was wrong and the atom type was > missing. > > After the correction, however, I am still struggling with the animation > functions in ccp4mg > > Zhongren > > > > -Original Message- > From: Mailing list for users of COOT Crystallographic Software > [mailto:c...@jiscmail.ac.uk] On Behalf Of Paul Emsley > Sent: Monday, September 07, 2009 5:04 AM > To: COOT@JISCMAIL.AC.UK > Subject: Re: ccp4mg > > Wu, Zhongren wrote: >> I am using ccp4mg to get nice graphics for presentations. I have no >> problems to get movie.gif files for structure rotations. However, >> when use animation, I ran into a lot problems. I followed the >> instructions closely and get morph files (pdb format) from the >> yale.edu server. But ccp4mg refuses to take them, complaining the >> wrong format. I hope somebody can help me out. >> > > Hello Zhongren Wu, > > If ccp4mg complains about the format of the PDB file(s) it is probably > right. The devil is in the detail - what does it say? If I had to > guess, I'd say that the files from they yale.edu are not sanctioned PDB > format. > > Paul. > > p.s. slightly ironic that you should ask about ccp4mg here. There is a > mailing list for ccp4mg questions: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?A0=CCP4MG > William G. Scott Contact info: http://chemistry.ucsc.edu/~wgscott/
Re: [COOT] ccp4mg
Paul, Thank you for the mail. It is indeed a problem in the PDB format, generated at the Yale server. The segID was wrong and the atom type was missing. After the correction, however, I am still struggling with the animation functions in ccp4mg Zhongren -Original Message- From: Mailing list for users of COOT Crystallographic Software [mailto:c...@jiscmail.ac.uk] On Behalf Of Paul Emsley Sent: Monday, September 07, 2009 5:04 AM To: COOT@JISCMAIL.AC.UK Subject: Re: ccp4mg Wu, Zhongren wrote: > I am using ccp4mg to get nice graphics for presentations. I have no > problems to get movie.gif files for structure rotations. However, > when use animation, I ran into a lot problems. I followed the > instructions closely and get morph files (pdb format) from the > yale.edu server. But ccp4mg refuses to take them, complaining the > wrong format. I hope somebody can help me out. > Hello Zhongren Wu, If ccp4mg complains about the format of the PDB file(s) it is probably right. The devil is in the detail - what does it say? If I had to guess, I'd say that the files from they yale.edu are not sanctioned PDB format. Paul. p.s. slightly ironic that you should ask about ccp4mg here. There is a mailing list for ccp4mg questions: https://www.jiscmail.ac.uk/cgi-bin/webadmin?A0=CCP4MG
Re: [COOT] ccp4mg
Wu, Zhongren wrote: I am using ccp4mg to get nice graphics for presentations. I have no problems to get movie.gif files for structure rotations. However, when use animation, I ran into a lot problems. I followed the instructions closely and get morph files (pdb format) from the yale.edu server. But ccp4mg refuses to take them, complaining the wrong format. I hope somebody can help me out. Hello Zhongren Wu, If ccp4mg complains about the format of the PDB file(s) it is probably right. The devil is in the detail - what does it say? If I had to guess, I'd say that the files from they yale.edu are not sanctioned PDB format. Paul. p.s. slightly ironic that you should ask about ccp4mg here. There is a mailing list for ccp4mg questions: https://www.jiscmail.ac.uk/cgi-bin/webadmin?A0=CCP4MG
