[cytoscape/cytoscape-api] cdf9f9: Switch to regular jar instead of aggregate jar for...

2019-08-16 Thread dotasek
  Branch: refs/heads/java11-javadoc
  Home:   https://github.com/cytoscape/cytoscape-api
  Commit: cdf9f90b128b42d4d2531e711148280cbfd5d6b8
  
https://github.com/cytoscape/cytoscape-api/commit/cdf9f90b128b42d4d2531e711148280cbfd5d6b8
  Author: D 
  Date:   2019-08-16 (Fri, 16 Aug 2019)

  Changed paths:
M app-api/pom.xml

  Log Message:
  ---
  Switch to regular jar instead of aggregate jar for javadoc


  Commit: 15fec711bc28972b9e692c66430d097e95bd8f08
  
https://github.com/cytoscape/cytoscape-api/commit/15fec711bc28972b9e692c66430d097e95bd8f08
  Author: D 
  Date:   2019-08-16 (Fri, 16 Aug 2019)

  Changed paths:
M property-api/pom.xml
M swing-app-api/pom.xml

  Log Message:
  ---
  Enable javadoc generation for swing-app-api


  Commit: 0cd2a105e3ded7534fd8d541d8178e675f38e676
  
https://github.com/cytoscape/cytoscape-api/commit/0cd2a105e3ded7534fd8d541d8178e675f38e676
  Author: D 
  Date:   2019-08-16 (Fri, 16 Aug 2019)

  Changed paths:
M app-api/pom.xml

  Log Message:
  ---
  Remove explicit links from javadoc (inherit intead)


Compare: 
https://github.com/cytoscape/cytoscape-api/compare/ed32615bc832...0cd2a105e3de

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[cytoscape/cytoscape-gui-distribution]

2019-08-16 Thread dotasek
  Branch: refs/heads/java11
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution

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[PathwayCommons/factoid] 4f7efd: Complexes should have higher rendering priority

2019-08-16 Thread Max Franz
  Branch: refs/heads/autoground
  Home:   https://github.com/PathwayCommons/factoid
  Commit: 4f7efd6e7571b8d00d6264707c02f0f3083a4cbf
  
https://github.com/PathwayCommons/factoid/commit/4f7efd6e7571b8d00d6264707c02f0f3083a4cbf
  Author: Max Franz 
  Date:   2019-08-16 (Fri, 16 Aug 2019)

  Changed paths:
M src/client/components/element-info/entity-info.js

  Log Message:
  ---
  Complexes should have higher rendering priority


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[PathwayCommons/factoid] b7632b: Delete complex immediately after dragging out the ...

2019-08-16 Thread Max Franz
  Branch: refs/heads/unstable
  Home:   https://github.com/PathwayCommons/factoid
  Commit: b7632b00ad54f072d37c9de6223a5c2ee36ff646
  
https://github.com/PathwayCommons/factoid/commit/b7632b00ad54f072d37c9de6223a5c2ee36ff646
  Author: metincansiper 
  Date:   2019-08-15 (Thu, 15 Aug 2019)

  Changed paths:
M src/client/components/editor/cy/compound-dnd.js
M src/client/components/editor/cy/stylesheet.js

  Log Message:
  ---
  Delete complex immediately after dragging out the second last child node #514


  Commit: bc0a8fc79c3e26170d4f514c701ab73504fa7f8e
  
https://github.com/PathwayCommons/factoid/commit/bc0a8fc79c3e26170d4f514c701ab73504fa7f8e
  Author: Max Franz 
  Date:   2019-08-16 (Fri, 16 Aug 2019)

  Changed paths:
M src/client/components/editor/cy/compound-dnd.js
M src/client/components/editor/cy/stylesheet.js

  Log Message:
  ---
  Merge pull request #535 from metincansiper/drag-out-fix

Delete complex immediately after dragging out the second last child node


Compare: 
https://github.com/PathwayCommons/factoid/compare/7090c733702b...bc0a8fc79c3e

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[PathwayCommons/factoid] d5db64: Make the UI consistent for interaction revision an...

2019-08-16 Thread Max Franz
  Branch: refs/heads/autoground
  Home:   https://github.com/PathwayCommons/factoid
  Commit: d5db64221c8c8265514eb82a274d1f8280e39804
  
https://github.com/PathwayCommons/factoid/commit/d5db64221c8c8265514eb82a274d1f8280e39804
  Author: Max Franz 
  Date:   2019-08-16 (Fri, 16 Aug 2019)

  Changed paths:
M src/client/components/element-info/interaction-info.js
M src/styles/element-info/interaction-info.css

  Log Message:
  ---
  Make the UI consistent for interaction revision and entity revision.


  Commit: 5da89ce4b43a28e463e2a310973ab316706e4112
  
https://github.com/PathwayCommons/factoid/commit/5da89ce4b43a28e463e2a310973ab316706e4112
  Author: Max Franz 
  Date:   2019-08-16 (Fri, 16 Aug 2019)

  Changed paths:
M src/client/components/editor/cy/compound-dnd.js
M src/client/components/editor/cy/stylesheet.js
M src/client/components/element-info/entity-assoc-display.js
M src/client/components/element-info/entity-info.js

  Log Message:
  ---
  Complexes use a similar UI to autogrounded proteins


Compare: 
https://github.com/PathwayCommons/factoid/compare/12368605...5da89ce4b43a

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[PathwayCommons/factoid] ed5482: Remove unused function

2019-08-16 Thread Max Franz
  Branch: refs/heads/autoground
  Home:   https://github.com/PathwayCommons/factoid
  Commit: ed5482eb871d6340f12e8bb91a182e36ebcb5c5f
  
https://github.com/PathwayCommons/factoid/commit/ed5482eb871d6340f12e8bb91a182e36ebcb5c5f
  Author: Max Franz 
  Date:   2019-08-16 (Fri, 16 Aug 2019)

  Changed paths:
M src/client/components/element-info/interaction-info.js

  Log Message:
  ---
  Remove unused function


  Commit: 12368605efbee1713f97a6088a8ccc01239a
  
https://github.com/PathwayCommons/factoid/commit/12368605efbee1713f97a6088a8ccc01239a
  Author: Max Franz 
  Date:   2019-08-16 (Fri, 16 Aug 2019)

  Changed paths:
M src/client/components/tasks.js

  Log Message:
  ---
  Exclude incomplete interactions from the submit button task list.

Those interactions are of type "other" and are as valid as automatically 
grounded entities.  They may not be as specific as they could be, but they are 
still valid.  For example, a user might not click any type, because "other" is 
the best fit and it's already selected by default.


Compare: 
https://github.com/PathwayCommons/factoid/compare/b7931386ddb8...12368605

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