[cytoscape/cytoscape.js] ca7762: Deploying to gh-pages from @ cytoscape/cytoscape.j...

2024-04-25 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/gh-pages
  Home:   https://github.com/cytoscape/cytoscape.js
  Commit: ca77624c15d1d49d1d0c4af0112c62b1cbdaf1c1
  
https://github.com/cytoscape/cytoscape.js/commit/ca77624c15d1d49d1d0c4af0112c62b1cbdaf1c1
  Author: mikekucera 
  Date:   2024-04-25 (Thu, 25 Apr 2024)

  Changed paths:
M index.html
M js/cytoscape.min.js
M versions.json

  Log Message:
  ---
  Deploying to gh-pages from @ 
cytoscape/cytoscape.js@3af3d5cf0539cba4d3c370e321598ad573d220a6 



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[cytoscape/cytoscape.js]

2024-04-25 Thread 'github-actions[bot]' via cytoscape-cvs
  Branch: refs/tags/v3.29.2
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[cytoscape/cytoscape.js] 98216e: Build 3.29.2

2024-04-25 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/master
  Home:   https://github.com/cytoscape/cytoscape.js
  Commit: 98216e5323c623e948e3ccd273e543d0d38da914
  
https://github.com/cytoscape/cytoscape.js/commit/98216e5323c623e948e3ccd273e543d0d38da914
  Author: mikekucera 
  Date:   2024-04-25 (Thu, 25 Apr 2024)

  Changed paths:
M dist/cytoscape.cjs.js
M dist/cytoscape.esm.min.mjs
M dist/cytoscape.esm.mjs
M dist/cytoscape.min.js
M dist/cytoscape.umd.js
M documentation/index.html
M documentation/js/cytoscape.min.js

  Log Message:
  ---
  Build 3.29.2


  Commit: f036313e5b095fb5cfe3320398c92a7b5699d70b
  
https://github.com/cytoscape/cytoscape.js/commit/f036313e5b095fb5cfe3320398c92a7b5699d70b
  Author: mikekucera 
  Date:   2024-04-25 (Thu, 25 Apr 2024)

  Changed paths:
M package-lock.json
M package.json

  Log Message:
  ---
  3.29.2


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[cytoscape/cytoscape.js] 6da4c8: Docs: Add 3.29.2 to versions.json

2024-04-25 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/unstable
  Home:   https://github.com/cytoscape/cytoscape.js
  Commit: 6da4c8e8011e5f7c8acf03b57aafdb1a6c256306
  
https://github.com/cytoscape/cytoscape.js/commit/6da4c8e8011e5f7c8acf03b57aafdb1a6c256306
  Author: mikekucera 
  Date:   2024-04-25 (Thu, 25 Apr 2024)

  Changed paths:
M documentation/versions.json

  Log Message:
  ---
  Docs: Add 3.29.2 to versions.json



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[cytoscape/cytoscape.js] 79bf3e: Docs: Add 3.29.2 to versions.json

2024-04-25 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/master
  Home:   https://github.com/cytoscape/cytoscape.js
  Commit: 79bf3e39b26d97882a165e003b9a5e6dea24b705
  
https://github.com/cytoscape/cytoscape.js/commit/79bf3e39b26d97882a165e003b9a5e6dea24b705
  Author: mikekucera 
  Date:   2024-04-25 (Thu, 25 Apr 2024)

  Changed paths:
M documentation/versions.json

  Log Message:
  ---
  Docs: Add 3.29.2 to versions.json



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[cytoscape/cytoscape.js] bed664: fix(umd): exported cytoscape.umd, closes #3239

2024-04-25 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/unstable
  Home:   https://github.com/cytoscape/cytoscape.js
  Commit: bed664570a9796f3990395058b34fc6e8faa1cd9
  
https://github.com/cytoscape/cytoscape.js/commit/bed664570a9796f3990395058b34fc6e8faa1cd9
  Author: Jan Molak <1089173+jan-mo...@users.noreply.github.com>
  Date:   2024-04-25 (Thu, 25 Apr 2024)

  Changed paths:
M package.json

  Log Message:
  ---
  fix(umd): exported cytoscape.umd, closes #3239


  Commit: c0bd5df243dd165cd7ed0a5cb7c4067402156a80
  
https://github.com/cytoscape/cytoscape.js/commit/c0bd5df243dd165cd7ed0a5cb7c4067402156a80
  Author: Mike Kucera 
  Date:   2024-04-25 (Thu, 25 Apr 2024)

  Changed paths:
M package.json

  Log Message:
  ---
  add require for cytoscape.umd.js


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[cytoscape/cytoscape.js] 3af3d5: add require for cytoscape.umd.js

2024-04-25 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/master
  Home:   https://github.com/cytoscape/cytoscape.js
  Commit: 3af3d5cf0539cba4d3c370e321598ad573d220a6
  
https://github.com/cytoscape/cytoscape.js/commit/3af3d5cf0539cba4d3c370e321598ad573d220a6
  Author: Mike Kucera 
  Date:   2024-04-25 (Thu, 25 Apr 2024)

  Changed paths:
M package.json

  Log Message:
  ---
  add require for cytoscape.umd.js



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[cytoscape/cytoscape.js] 01717e: fix(umd): exported cytoscape.umd, closes #3239

2024-04-25 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/master
  Home:   https://github.com/cytoscape/cytoscape.js
  Commit: 01717ecab8d2abb7a135d8e82487e1eb3840a60e
  
https://github.com/cytoscape/cytoscape.js/commit/01717ecab8d2abb7a135d8e82487e1eb3840a60e
  Author: Jan Molak <1089173+jan-mo...@users.noreply.github.com>
  Date:   2024-04-24 (Wed, 24 Apr 2024)

  Changed paths:
M package.json

  Log Message:
  ---
  fix(umd): exported cytoscape.umd, closes #3239


  Commit: 3f9444ecc24df869239f201314c960540dad556c
  
https://github.com/cytoscape/cytoscape.js/commit/3f9444ecc24df869239f201314c960540dad556c
  Author: Mike Kucera 
  Date:   2024-04-25 (Thu, 25 Apr 2024)

  Changed paths:
M package.json

  Log Message:
  ---
  Merge pull request #3241 from jan-molak/fix/umd-3239

fix(umd): exported cytoscape.umd, closes #3239


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[PathwayCommons/factoid] e6cff8: Prettify the relations and present subset in the UI.

2024-04-25 Thread 'Jeffrey' via cytoscape-cvs
  Branch: refs/heads/unstable
  Home:   https://github.com/PathwayCommons/factoid
  Commit: e6cff8f4667bbd13f4a5b6576e70961dd2e99edf
  
https://github.com/PathwayCommons/factoid/commit/e6cff8f4667bbd13f4a5b6576e70961dd2e99edf
  Author: Jeffrey Wong 
  Date:   2024-04-24 (Wed, 24 Apr 2024)

  Changed paths:
M src/client/components/editor/info-panel.js
M src/util/pubmed.js

  Log Message:
  ---
  Prettify the relations and present subset in the UI.


  Commit: 41547dedeaca03326d86bb1870237b4028f22b3a
  
https://github.com/PathwayCommons/factoid/commit/41547dedeaca03326d86bb1870237b4028f22b3a
  Author: Jeffrey Wong 
  Date:   2024-04-24 (Wed, 24 Apr 2024)

  Changed paths:
M src/client/components/editor/info-panel.js
M src/styles/editor/editor.css
M src/util/pubmed.js
M src/util/strings.js

  Log Message:
  ---
  Improve the formatting of paper relations.


  Commit: f695b14647711ac6af4d93ad1315b09d31ac2ccb
  
https://github.com/PathwayCommons/factoid/commit/f695b14647711ac6af4d93ad1315b09d31ac2ccb
  Author: Jeffrey Wong 
  Date:   2024-04-24 (Wed, 24 Apr 2024)

  Changed paths:
M src/client/components/editor/info-panel.js
M src/styles/editor/editor.css
M src/util/pubmed.js
M src/util/strings.js

  Log Message:
  ---
  Present all relations


  Commit: 1aa547c62d63b31c3bc54f4caa81db5e268f2a55
  
https://github.com/PathwayCommons/factoid/commit/1aa547c62d63b31c3bc54f4caa81db5e268f2a55
  Author: Jeffrey 
  Date:   2024-04-25 (Thu, 25 Apr 2024)

  Changed paths:
M src/client/components/editor/info-panel.js
M src/styles/editor/editor.css
M src/util/pubmed.js
M src/util/strings.js

  Log Message:
  ---
  Merge pull request #1252 from PathwayCommons/iss1203_citation-relation

Show links relation papers in the Explorer


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[PathwayCommons/factoid] f297c9: Include fetch response in HTTPStatusError; Log HTT...

2024-04-25 Thread 'Jeffrey' via cytoscape-cvs
  Branch: refs/heads/unstable
  Home:   https://github.com/PathwayCommons/factoid
  Commit: f297c9915ecb52818d6343e6001c7919dd09fa21
  
https://github.com/PathwayCommons/factoid/commit/f297c9915ecb52818d6343e6001c7919dd09fa21
  Author: Jeffrey Wong 
  Date:   2024-04-25 (Thu, 25 Apr 2024)

  Changed paths:
M src/server/routes/api/document/crossref/works.js
M src/server/routes/api/document/pubmed/index.js
M src/util/fetch.js

  Log Message:
  ---
  Include fetch response in HTTPStatusError; Log HTTP errors in resource 
function calls.


  Commit: f46e4785cfa28ceb8025cb8dbf98d677be3843b0
  
https://github.com/PathwayCommons/factoid/commit/f46e4785cfa28ceb8025cb8dbf98d677be3843b0
  Author: Jeffrey Wong 
  Date:   2024-04-25 (Thu, 25 Apr 2024)

  Changed paths:
M src/server/routes/api/document/crossref/works.js
M src/server/routes/api/document/pubmed/index.js
M src/server/routes/api/document/update.js

  Log Message:
  ---
  ArticleIDError logged at info-level.


  Commit: 3ca56e918350ab0308e703b746a57a859d1b
  
https://github.com/PathwayCommons/factoid/commit/3ca56e918350ab0308e703b746a57a859d1b
  Author: Jeffrey Wong 
  Date:   2024-04-25 (Thu, 25 Apr 2024)

  Changed paths:
M src/server/routes/api/document/crossref/works.js
M src/server/routes/api/document/pubmed/index.js
M src/server/routes/api/document/update.js

  Log Message:
  ---
  Revert update changes.


  Commit: ff496b568eb7e16ca43d434a0f2811d81f69853b
  
https://github.com/PathwayCommons/factoid/commit/ff496b568eb7e16ca43d434a0f2811d81f69853b
  Author: Jeffrey 
  Date:   2024-04-25 (Thu, 25 Apr 2024)

  Changed paths:
M src/server/routes/api/document/crossref/works.js
M src/server/routes/api/document/pubmed/index.js
M src/util/fetch.js

  Log Message:
  ---
  Merge pull request #1253 from 
PathwayCommons/iss1251_more-informative-error-logging

More informative logging


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[PathwayCommons/factoid] 3ca56e: Revert update changes.

2024-04-25 Thread 'Jeffrey' via cytoscape-cvs
  Branch: refs/heads/iss1251_more-informative-error-logging
  Home:   https://github.com/PathwayCommons/factoid
  Commit: 3ca56e918350ab0308e703b746a57a859d1b
  
https://github.com/PathwayCommons/factoid/commit/3ca56e918350ab0308e703b746a57a859d1b
  Author: Jeffrey Wong 
  Date:   2024-04-25 (Thu, 25 Apr 2024)

  Changed paths:
M src/server/routes/api/document/crossref/works.js
M src/server/routes/api/document/pubmed/index.js
M src/server/routes/api/document/update.js

  Log Message:
  ---
  Revert update changes.



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[PathwayCommons/factoid] f46e47: ArticleIDError logged at info-level.

2024-04-25 Thread 'Jeffrey' via cytoscape-cvs
  Branch: refs/heads/iss1251_more-informative-error-logging
  Home:   https://github.com/PathwayCommons/factoid
  Commit: f46e4785cfa28ceb8025cb8dbf98d677be3843b0
  
https://github.com/PathwayCommons/factoid/commit/f46e4785cfa28ceb8025cb8dbf98d677be3843b0
  Author: Jeffrey Wong 
  Date:   2024-04-25 (Thu, 25 Apr 2024)

  Changed paths:
M src/server/routes/api/document/crossref/works.js
M src/server/routes/api/document/pubmed/index.js
M src/server/routes/api/document/update.js

  Log Message:
  ---
  ArticleIDError logged at info-level.



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[PathwayCommons/factoid] f297c9: Include fetch response in HTTPStatusError; Log HTT...

2024-04-25 Thread 'Jeffrey' via cytoscape-cvs
  Branch: refs/heads/iss1251_more-informative-error-logging
  Home:   https://github.com/PathwayCommons/factoid
  Commit: f297c9915ecb52818d6343e6001c7919dd09fa21
  
https://github.com/PathwayCommons/factoid/commit/f297c9915ecb52818d6343e6001c7919dd09fa21
  Author: Jeffrey Wong 
  Date:   2024-04-25 (Thu, 25 Apr 2024)

  Changed paths:
M src/server/routes/api/document/crossref/works.js
M src/server/routes/api/document/pubmed/index.js
M src/util/fetch.js

  Log Message:
  ---
  Include fetch response in HTTPStatusError; Log HTTP errors in resource 
function calls.



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[PathwayCommons/factoid] f297c9: Include fetch response in HTTPStatusError; Log HTT...

2024-04-25 Thread 'Jeffrey' via cytoscape-cvs
  Branch: refs/heads/iss1251_rate-limit-update
  Home:   https://github.com/PathwayCommons/factoid
  Commit: f297c9915ecb52818d6343e6001c7919dd09fa21
  
https://github.com/PathwayCommons/factoid/commit/f297c9915ecb52818d6343e6001c7919dd09fa21
  Author: Jeffrey Wong 
  Date:   2024-04-25 (Thu, 25 Apr 2024)

  Changed paths:
M src/server/routes/api/document/crossref/works.js
M src/server/routes/api/document/pubmed/index.js
M src/util/fetch.js

  Log Message:
  ---
  Include fetch response in HTTPStatusError; Log HTTP errors in resource 
function calls.



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[PathwayCommons/factoid] 4e28be: Linting.

2024-04-25 Thread 'Jeffrey' via cytoscape-cvs
  Branch: refs/heads/iss1251_rate-limit-update
  Home:   https://github.com/PathwayCommons/factoid
  Commit: 4e28bec594b5873a8d8c080626fb725bafc9df0a
  
https://github.com/PathwayCommons/factoid/commit/4e28bec594b5873a8d8c080626fb725bafc9df0a
  Author: Jeffrey Wong 
  Date:   2024-04-25 (Thu, 25 Apr 2024)

  Changed paths:
M src/server/routes/api/document/crossref/works.js
M src/server/routes/api/document/pubmed/index.js

  Log Message:
  ---
  Linting.



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[PathwayCommons/factoid] 4a3224: Include fetch response in HTTPStatusError; Log HTT...

2024-04-25 Thread 'Jeffrey' via cytoscape-cvs
  Branch: refs/heads/iss1251_rate-limit-update
  Home:   https://github.com/PathwayCommons/factoid
  Commit: 4a3224861254dcb434aa0baf41956ff0de0f8bad
  
https://github.com/PathwayCommons/factoid/commit/4a3224861254dcb434aa0baf41956ff0de0f8bad
  Author: Jeffrey Wong 
  Date:   2024-04-25 (Thu, 25 Apr 2024)

  Changed paths:
M src/server/routes/api/document/crossref/works.js
M src/server/routes/api/document/pubmed/index.js
M src/util/fetch.js

  Log Message:
  ---
  Include fetch response in HTTPStatusError; Log HTTP errors in resource 
function calls.



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