[cytoscape/cytoscape-gui-distribution] 0b900c: Set version to 3.10.3

2024-04-12 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/release/3.10.3
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 0b900c3f6688ee9cae7989ef55356d2f28e32316
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/0b900c3f6688ee9cae7989ef55356d2f28e32316
  Author: Mike Kucera 
  Date:   2024-04-12 (Fri, 12 Apr 2024)

  Changed paths:
M application-metadata-impl/pom.xml
M assembly/pom.xml
M assembly/src/main/bin/cytoscape.bat
M assembly/src/main/bin/cytoscape.sh
M branding/pom.xml
M cmdline-impl/pom.xml
M diagnostics/pom.xml
M features/pom.xml
M integration-test/pom.xml
M launcher/pom.xml
M packaging/pom.xml
M pom.xml
M splash-launcher/pom.xml
M splash-updater-impl/pom.xml
M third-party/pom.xml

  Log Message:
  ---
  Set version to 3.10.3



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[cytoscape/cytoscape-gui-distribution] 761385: Update .travis.yml to use Java 17

2024-02-26 Thread 'Jing Chen' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 76138517e0f733d2cb8698e661cfa46d743e0433
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/76138517e0f733d2cb8698e661cfa46d743e0433
  Author: Jing Chen 
  Date:   2024-02-22 (Thu, 22 Feb 2024)

  Changed paths:
M .travis.yml

  Log Message:
  ---
  Update .travis.yml to use Java 17


  Commit: 51af388e715d873caa80a8487674c624f5f48d48
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/51af388e715d873caa80a8487674c624f5f48d48
  Author: Jing Chen 
  Date:   2024-02-26 (Mon, 26 Feb 2024)

  Changed paths:
M .travis.yml

  Log Message:
  ---
  Merge pull request #11 from cytoscape/jingjingbic-patch-1

Update .travis.yml to use Java 17


Compare: 
https://github.com/cytoscape/cytoscape-gui-distribution/compare/e77c6a2f8266...51af388e715d

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[cytoscape/cytoscape-gui-distribution] d04e6b: Update the cx-support version to fix NPE.

2024-02-26 Thread 'Jing Chen' via cytoscape-cvs
  Branch: refs/heads/release/3.10.2
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: d04e6b0f1ffdc21fc190b355c040ba3bd571ba4f
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/d04e6b0f1ffdc21fc190b355c040ba3bd571ba4f
  Author: jingjingbic 
  Date:   2024-02-26 (Mon, 26 Feb 2024)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update the cx-support version to fix NPE.



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[cytoscape/cytoscape-gui-distribution] 761385: Update .travis.yml to use Java 17

2024-02-22 Thread 'Jing Chen' via cytoscape-cvs
  Branch: refs/heads/jingjingbic-patch-1
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 76138517e0f733d2cb8698e661cfa46d743e0433
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/76138517e0f733d2cb8698e661cfa46d743e0433
  Author: Jing Chen 
  Date:   2024-02-22 (Thu, 22 Feb 2024)

  Changed paths:
M .travis.yml

  Log Message:
  ---
  Update .travis.yml to use Java 17



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[cytoscape/cytoscape-gui-distribution] e77c6a: Update the cx-support version to fix NPE.

2024-02-22 Thread 'Jing Chen' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: e77c6a2f8266f56f4d8c1d27aea82a4028aa9b83
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/e77c6a2f8266f56f4d8c1d27aea82a4028aa9b83
  Author: jingjingbic 
  Date:   2024-02-22 (Thu, 22 Feb 2024)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update the cx-support version to fix NPE.



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[cytoscape/cytoscape-gui-distribution] dbfb5e: Bump analyzer version from '4.4.8' to '4.5.0'

2024-02-21 Thread 'Jing Chen' via cytoscape-cvs
  Branch: refs/heads/release/3.10.2
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: dbfb5edf47e067c0af03b1efa8b1daa9fe66069d
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/dbfb5edf47e067c0af03b1efa8b1daa9fe66069d
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2024-02-21 (Wed, 21 Feb 2024)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Bump analyzer version from '4.4.8' to '4.5.0'


  Commit: 795532c32e61dbbd09b0877321129c7e5faab7b2
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/795532c32e61dbbd09b0877321129c7e5faab7b2
  Author: Chris Churas 
  Date:   2024-02-21 (Wed, 21 Feb 2024)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  bump diffusion to 1.6.4


  Commit: 7927b6587abbe9ded259d36ff74a3b1c93515a21
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/7927b6587abbe9ded259d36ff74a3b1c93515a21
  Author: jingjingbic 
  Date:   2024-02-21 (Wed, 21 Feb 2024)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Upgrade cx-support core app.


Compare: 
https://github.com/cytoscape/cytoscape-gui-distribution/compare/8cd5de85080a...7927b6587abb

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[cytoscape/cytoscape-gui-distribution] c4b705: Upgrade cx-support core app.

2024-02-15 Thread 'Jing Chen' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: c4b705d28ee06b59521431bb3bd830c73f684227
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/c4b705d28ee06b59521431bb3bd830c73f684227
  Author: jingjingbic 
  Date:   2024-02-15 (Thu, 15 Feb 2024)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Upgrade cx-support core app.


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[cytoscape/cytoscape-gui-distribution] ee8dd1: bump diffusion to 1.6.4

2024-01-11 Thread 'Chris Churas' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: ee8dd131523f1bb353e46cba1c5740748fcdf971
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/ee8dd131523f1bb353e46cba1c5740748fcdf971
  Author: Chris Churas 
  Date:   2024-01-11 (Thu, 11 Jan 2024)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  bump diffusion to 1.6.4


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[cytoscape/cytoscape-gui-distribution] 975877: Bump analyzer version from '4.4.8' to '4.5.0'

2024-01-09 Thread 'Yihang Xin' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 97587739b92325d7d2f9708f6965861e586731eb
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/97587739b92325d7d2f9708f6965861e586731eb
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2024-01-09 (Tue, 09 Jan 2024)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Bump analyzer version from '4.4.8' to '4.5.0'


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[cytoscape/cytoscape-gui-distribution] ee570d: CYTOSCAPE-13118 Update install4j for karaf 4.3.9

2023-12-23 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: ee570d05afeb15b454c3627f7b72066275f56d9f
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/ee570d05afeb15b454c3627f7b72066275f56d9f
  Author: Mike Kucera 
  Date:   2023-12-23 (Sat, 23 Dec 2023)

  Changed paths:
M packaging/src/main/install4j/Cytoscape.install4j

  Log Message:
  ---
  CYTOSCAPE-13118 Update install4j for karaf 4.3.9


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[cytoscape/cytoscape-gui-distribution]

2023-12-05 Thread 'dependabot[bot]' via cytoscape-cvs
  Branch: 
refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-classic-1.3.12
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution

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[cytoscape/cytoscape-gui-distribution] 2f05ae: Bump ch.qos.logback:logback-classic in /integratio...

2023-12-05 Thread 'dependabot[bot]' via cytoscape-cvs
  Branch: 
refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-classic-1.2.13
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 2f05aeaf3b1ea756e74e62de1ef61e87de3ec81d
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/2f05aeaf3b1ea756e74e62de1ef61e87de3ec81d
  Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
  Date:   2023-12-05 (Tue, 05 Dec 2023)

  Changed paths:
M integration-test/pom.xml

  Log Message:
  ---
  Bump ch.qos.logback:logback-classic in /integration-test

Bumps [ch.qos.logback:logback-classic](https://github.com/qos-ch/logback) from 
0.9.29 to 1.2.13.
- [Commits](https://github.com/qos-ch/logback/compare/v_0.9.29...v_1.2.13)

---
updated-dependencies:
- dependency-name: ch.qos.logback:logback-classic
  dependency-type: direct:development
...

Signed-off-by: dependabot[bot] 


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[cytoscape/cytoscape-gui-distribution]

2023-12-05 Thread 'dependabot[bot]' via cytoscape-cvs
  Branch: 
refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-core-1.3.12
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution

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[cytoscape/cytoscape-gui-distribution] aaed9e: Bump ch.qos.logback:logback-core in /integration-test

2023-12-05 Thread 'dependabot[bot]' via cytoscape-cvs
  Branch: 
refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-core-1.2.13
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: aaed9e5c564958f378e18b3167cb65b9224456ac
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/aaed9e5c564958f378e18b3167cb65b9224456ac
  Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
  Date:   2023-12-05 (Tue, 05 Dec 2023)

  Changed paths:
M integration-test/pom.xml

  Log Message:
  ---
  Bump ch.qos.logback:logback-core in /integration-test

Bumps [ch.qos.logback:logback-core](https://github.com/qos-ch/logback) from 
0.9.29 to 1.2.13.
- [Commits](https://github.com/qos-ch/logback/compare/v_0.9.29...v_1.2.13)

---
updated-dependencies:
- dependency-name: ch.qos.logback:logback-core
  dependency-type: direct:development
...

Signed-off-by: dependabot[bot] 


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[cytoscape/cytoscape-gui-distribution] 8cd5de: Set version to 3.10.2

2023-12-02 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/release/3.10.2
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 8cd5de85080a10e690cd8235c835b9fb334ef635
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/8cd5de85080a10e690cd8235c835b9fb334ef635
  Author: Mike Kucera 
  Date:   2023-12-02 (Sat, 02 Dec 2023)

  Changed paths:
M application-metadata-impl/pom.xml
M assembly/pom.xml
M assembly/src/main/bin/cytoscape.bat
M assembly/src/main/bin/cytoscape.sh
M branding/pom.xml
M cmdline-impl/pom.xml
M diagnostics/pom.xml
M features/pom.xml
M integration-test/pom.xml
M launcher/pom.xml
M packaging/pom.xml
M pom.xml
M splash-launcher/pom.xml
M splash-updater-impl/pom.xml
M third-party/pom.xml

  Log Message:
  ---
  Set version to 3.10.2


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[cytoscape/cytoscape-gui-distribution] c178a9: Added new sample session

2023-11-30 Thread 'Scooter Morris' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: c178a9090d90a8f7c348a50cfb8cfaaa496ee1df
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/c178a9090d90a8f7c348a50cfb8cfaaa496ee1df
  Author: Scooter Morris 
  Date:   2023-11-30 (Thu, 30 Nov 2023)

  Changed paths:
A assembly/src/main/resources/sampleData/sessions/The_Yeast_Interactome.cys

  Log Message:
  ---
  Added new sample session


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[cytoscape/cytoscape-gui-distribution]

2023-11-29 Thread 'dependabot[bot]' via cytoscape-cvs
  Branch: 
refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-core-1.2.9
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution

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[cytoscape/cytoscape-gui-distribution] 979c9e: Bump ch.qos.logback:logback-core in /integration-test

2023-11-29 Thread 'dependabot[bot]' via cytoscape-cvs
  Branch: 
refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-core-1.3.12
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 979c9e534383c79b075d8424769e144e9e300b20
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/979c9e534383c79b075d8424769e144e9e300b20
  Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
  Date:   2023-11-29 (Wed, 29 Nov 2023)

  Changed paths:
M integration-test/pom.xml

  Log Message:
  ---
  Bump ch.qos.logback:logback-core in /integration-test

Bumps [ch.qos.logback:logback-core](https://github.com/qos-ch/logback) from 
0.9.29 to 1.3.12.
- [Commits](https://github.com/qos-ch/logback/compare/v_0.9.29...v_1.3.12)

---
updated-dependencies:
- dependency-name: ch.qos.logback:logback-core
  dependency-type: direct:development
...

Signed-off-by: dependabot[bot] 


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[cytoscape/cytoscape-gui-distribution]

2023-11-29 Thread 'dependabot[bot]' via cytoscape-cvs
  Branch: 
refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-classic-1.2.0
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution

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[cytoscape/cytoscape-gui-distribution] 9cb583: Bump ch.qos.logback:logback-classic in /integratio...

2023-11-29 Thread 'dependabot[bot]' via cytoscape-cvs
  Branch: 
refs/heads/dependabot/maven/integration-test/ch.qos.logback-logback-classic-1.3.12
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 9cb583389c9d5c83c024b5a6df9e3471a7a3c80d
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/9cb583389c9d5c83c024b5a6df9e3471a7a3c80d
  Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
  Date:   2023-11-29 (Wed, 29 Nov 2023)

  Changed paths:
M integration-test/pom.xml

  Log Message:
  ---
  Bump ch.qos.logback:logback-classic in /integration-test

Bumps [ch.qos.logback:logback-classic](https://github.com/qos-ch/logback) from 
0.9.29 to 1.3.12.
- [Commits](https://github.com/qos-ch/logback/compare/v_0.9.29...v_1.3.12)

---
updated-dependencies:
- dependency-name: ch.qos.logback:logback-classic
  dependency-type: direct:development
...

Signed-off-by: dependabot[bot] 


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[cytoscape/cytoscape-gui-distribution] 8e81e5: CYTOSCAPE-13102 set -Djdk.util.zip.disableZip64Ext...

2023-08-21 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/release/3.10.1
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 8e81e58c5e39b49686fb0a7f6fe0151325bb4b34
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/8e81e58c5e39b49686fb0a7f6fe0151325bb4b34
  Author: Mike Kucera 
  Date:   2023-08-03 (Thu, 03 Aug 2023)

  Changed paths:
M assembly/src/main/bin/cytoscape.bat
M assembly/src/main/bin/cytoscape.sh
M packaging/src/main/install4j/Cytoscape.install4j

  Log Message:
  ---
  CYTOSCAPE-13102 set -Djdk.util.zip.disableZip64ExtraFieldValidation=true


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[cytoscape/cytoscape-gui-distribution] e15ff1: CYTOSCAPE-13102 set -Djdk.util.zip.disableZip64Ext...

2023-08-21 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: e15ff16c74f0599d90740f83c7221034b8bcb07f
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/e15ff16c74f0599d90740f83c7221034b8bcb07f
  Author: Mike Kucera 
  Date:   2023-08-03 (Thu, 03 Aug 2023)

  Changed paths:
M assembly/src/main/bin/cytoscape.bat
M assembly/src/main/bin/cytoscape.sh
M packaging/src/main/install4j/Cytoscape.install4j

  Log Message:
  ---
  CYTOSCAPE-13102 set -Djdk.util.zip.disableZip64ExtraFieldValidation=true


  Commit: c885ea3ee9c24f4d132d7decba28347e219846b3
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/c885ea3ee9c24f4d132d7decba28347e219846b3
  Author: Mike Kucera 
  Date:   2023-08-21 (Mon, 21 Aug 2023)

  Changed paths:
M .travis.settings.xml
M assembly/src/main/bin/cytoscape.bat
M assembly/src/main/bin/cytoscape.sh
M packaging/pom.xml
M splash-updater-impl/pom.xml
M third-party/pom.xml

  Log Message:
  ---
  Merge branch 'develop' into bug/CYTOSCAPE-13102


  Commit: e40af64bf02c125b216deed116bc67b59bb8d60e
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/e40af64bf02c125b216deed116bc67b59bb8d60e
  Author: Mike Kucera 
  Date:   2023-08-21 (Mon, 21 Aug 2023)

  Changed paths:
M assembly/src/main/bin/cytoscape.bat
M assembly/src/main/bin/cytoscape.sh

  Log Message:
  ---
  code cleanup


Compare: 
https://github.com/cytoscape/cytoscape-gui-distribution/compare/bb6722e215d5...e40af64bf02c

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[cytoscape/cytoscape-gui-distribution] bb6722: Use https instead of http

2023-08-21 Thread 'Scooter Morris' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: bb6722e215d57f3303c35e4184562812f521c762
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/bb6722e215d57f3303c35e4184562812f521c762
  Author: Scooter Morris 
  Date:   2023-08-21 (Mon, 21 Aug 2023)

  Changed paths:
M .travis.settings.xml

  Log Message:
  ---
  Use https instead of http


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[cytoscape/cytoscape-gui-distribution] 719a4b: Use https instead of http

2023-08-21 Thread 'Scooter Morris' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 719a4b1a0a28323915dc84c42911904b3adc3a85
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/719a4b1a0a28323915dc84c42911904b3adc3a85
  Author: Scooter Morris 
  Date:   2023-08-21 (Mon, 21 Aug 2023)

  Changed paths:
M packaging/pom.xml
M splash-updater-impl/pom.xml
M third-party/pom.xml

  Log Message:
  ---
  Use https instead of http


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[cytoscape/cytoscape-gui-distribution] d748d0: Added fix for Java 17.0.8 issue

2023-08-21 Thread 'Scooter Morris' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: d748d065a7aacd355ed52b71ddf5451ef26c70b6
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/d748d065a7aacd355ed52b71ddf5451ef26c70b6
  Author: Scooter Morris 
  Date:   2023-08-21 (Mon, 21 Aug 2023)

  Changed paths:
M assembly/src/main/bin/cytoscape.bat

  Log Message:
  ---
  Added fix for Java 17.0.8 issue


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[cytoscape/cytoscape-gui-distribution] fcdf3c: Add Java 17.0.8 workaround

2023-08-21 Thread 'Scooter Morris' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: fcdf3c2ca59fce1970d21087554f284cb05f3d94
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/fcdf3c2ca59fce1970d21087554f284cb05f3d94
  Author: Scooter Morris 
  Date:   2023-08-21 (Mon, 21 Aug 2023)

  Changed paths:
M assembly/src/main/bin/cytoscape.sh

  Log Message:
  ---
  Add Java 17.0.8 workaround


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[cytoscape/cytoscape-gui-distribution] 46779a: CYTOSCAPE-13091 remove mac specific launcher argum...

2023-07-05 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/release/3.10.1
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 46779a1588a4d593cf5889782a01a0c54bb86e39
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/46779a1588a4d593cf5889782a01a0c54bb86e39
  Author: Mike Kucera 
  Date:   2023-07-05 (Wed, 05 Jul 2023)

  Changed paths:
M packaging/src/main/install4j/Cytoscape.install4j

  Log Message:
  ---
  CYTOSCAPE-13091 remove mac specific launcher arguments


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[cytoscape/cytoscape-gui-distribution] 228999: CYTOSCAPE-13091 remove mac specific launcher argum...

2023-07-05 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 228999722dd45ee1b0be4e0a9de06d0a57f661fa
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/228999722dd45ee1b0be4e0a9de06d0a57f661fa
  Author: Mike Kucera 
  Date:   2023-07-05 (Wed, 05 Jul 2023)

  Changed paths:
M packaging/src/main/install4j/Cytoscape.install4j

  Log Message:
  ---
  CYTOSCAPE-13091 remove mac specific launcher arguments


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[cytoscape/cytoscape-gui-distribution]

2023-06-06 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/copyright2021
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution

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[cytoscape/cytoscape-gui-distribution]

2023-06-06 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/feature/custom-graphics-internal
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution

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[cytoscape/cytoscape-gui-distribution]

2023-06-06 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/CYTOSCAPE-12817
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution

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[cytoscape/cytoscape-gui-distribution]

2023-06-06 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/CYTOSCAPE-12765
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution

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[cytoscape/cytoscape-gui-distribution]

2023-06-06 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/feature/table-custom-graphics
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution

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[cytoscape/cytoscape-gui-distribution]

2023-06-06 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/dependabot/maven/integration-test/junit-junit-4.13.1
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution

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[cytoscape/cytoscape-gui-distribution]

2023-06-06 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/travis-ci
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution

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[cytoscape/cytoscape-gui-distribution]

2023-06-06 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/java11
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution

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[cytoscape/cytoscape-gui-distribution]

2023-06-06 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/feature/3.4-jobs
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution

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[cytoscape/cytoscape-gui-distribution]

2023-06-06 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/feature/network-search
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution

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[cytoscape/cytoscape-gui-distribution]

2023-06-06 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/feature/json-support
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution

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[cytoscape/cytoscape-gui-distribution] 258004: CYTOSCAPE-13080 revert change that removed lucene ...

2023-06-02 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/release/3.10.1
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 2580040fd0495864531c758d3b57bf0029f0761d
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/2580040fd0495864531c758d3b57bf0029f0761d
  Author: Mike Kucera 
  Date:   2023-06-02 (Fri, 02 Jun 2023)

  Changed paths:
M third-party/pom.xml

  Log Message:
  ---
  CYTOSCAPE-13080 revert change that removed lucene 3.0.2 from third-party


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[cytoscape/cytoscape-gui-distribution] 3389d7: Set version to 3.10.1

2023-06-02 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/release/3.10.1
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 3389d75dc02746ae5378514ec5349f21dbd6e1a0
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/3389d75dc02746ae5378514ec5349f21dbd6e1a0
  Author: Mike Kucera 
  Date:   2023-06-02 (Fri, 02 Jun 2023)

  Changed paths:
M application-metadata-impl/pom.xml
M assembly/pom.xml
M assembly/src/main/bin/cytoscape.bat
M assembly/src/main/bin/cytoscape.sh
M branding/pom.xml
M cmdline-impl/pom.xml
M diagnostics/pom.xml
M features/pom.xml
M integration-test/pom.xml
M launcher/pom.xml
M packaging/pom.xml
M pom.xml
M splash-launcher/pom.xml
M splash-updater-impl/pom.xml
M third-party/pom.xml

  Log Message:
  ---
  Set version to 3.10.1


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[cytoscape/cytoscape-gui-distribution] 149617: CYTOSCAPE-13080 revert change that removed lucene ...

2023-06-02 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 14961797e4d121e3f1e88564f6935796cd38dae3
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/14961797e4d121e3f1e88564f6935796cd38dae3
  Author: Mike Kucera 
  Date:   2023-06-02 (Fri, 02 Jun 2023)

  Changed paths:
M third-party/pom.xml

  Log Message:
  ---
  CYTOSCAPE-13080 revert change that removed lucene 3.0.2 from third-party


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[cytoscape/cytoscape-gui-distribution] 551a3c: Update enrichment-table to 2.0.5

2023-05-04 Thread 'Yihang Xin' via cytoscape-cvs
  Branch: refs/heads/release/3.10.0
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 551a3cdd0ad0f9dd96f1f8a668dc93aee7620078
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/551a3cdd0ad0f9dd96f1f8a668dc93aee7620078
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2023-05-04 (Thu, 04 May 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update enrichment-table to 2.0.5

Update enrichment-table to 2.0.5 to support App store


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[cytoscape/cytoscape-gui-distribution] 3cfc69: Update enrichment-table to 2.0.5

2023-05-02 Thread 'Yihang Xin' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 3cfc69370a0f01062c3d7d238e6e79a50ff91672
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/3cfc69370a0f01062c3d7d238e6e79a50ff91672
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2023-05-02 (Tue, 02 May 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update enrichment-table to 2.0.5

Update enrichment-table to 2.0.5 to support App store


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[cytoscape/cytoscape-gui-distribution] 74614b: Update cyBrowser to 1.3.12 to support App store

2023-04-27 Thread 'Yihang Xin' via cytoscape-cvs
  Branch: refs/heads/release/3.10.0
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 74614b8e0aeec1881738eb6cb64c9a1a68b5e693
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/74614b8e0aeec1881738eb6cb64c9a1a68b5e693
  Author: Scooter Morris 
  Date:   2023-04-27 (Thu, 27 Apr 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update cyBrowser to 1.3.12 to support App store


  Commit: 0a875f4f2be76c6776765e9701e5c29c28d00977
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/0a875f4f2be76c6776765e9701e5c29c28d00977
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2023-04-27 (Thu, 27 Apr 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update enrichment-table to 2.0.4 to support App store

Update enrichment-table to 2.0.4 to support App store


Compare: 
https://github.com/cytoscape/cytoscape-gui-distribution/compare/7d3e65faa158...0a875f4f2be7

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[cytoscape/cytoscape-gui-distribution] a705c0: Update enrichment-table to 2.0.4 to support App store

2023-04-27 Thread 'Yihang Xin' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: a705c08a8e1743f4bebb58f0f0afc2bc8d3b26d4
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/a705c08a8e1743f4bebb58f0f0afc2bc8d3b26d4
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2023-04-27 (Thu, 27 Apr 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update enrichment-table to 2.0.4 to support App store

Update enrichment-table to 2.0.4 to support App store


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[cytoscape/cytoscape-gui-distribution] 08b5af: Update cyBrowser to 1.3.12 to support App store

2023-04-24 Thread 'Scooter Morris' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 08b5af2b61cc8e589cf1c5f89272c5b3855ff344
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/08b5af2b61cc8e589cf1c5f89272c5b3855ff344
  Author: Scooter Morris 
  Date:   2023-04-24 (Mon, 24 Apr 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update cyBrowser to 1.3.12 to support App store


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[cytoscape/cytoscape-gui-distribution] 90f791: From now on, development branch is for 3.11.0-SNAP...

2023-04-11 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 90f7916f6f1339218473ec9de52468cfbe76ffa3
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/90f7916f6f1339218473ec9de52468cfbe76ffa3
  Author: Mike Kucera 
  Date:   2023-04-11 (Tue, 11 Apr 2023)

  Changed paths:
M application-metadata-impl/pom.xml
M assembly/pom.xml
M assembly/src/main/bin/cytoscape.bat
M assembly/src/main/bin/cytoscape.sh
M branding/pom.xml
M cmdline-impl/pom.xml
M diagnostics/pom.xml
M features/pom.xml
M integration-test/pom.xml
M launcher/pom.xml
M packaging/pom.xml
M pom.xml
M splash-launcher/pom.xml
M splash-updater-impl/pom.xml
M third-party/pom.xml

  Log Message:
  ---
  From now on, development branch is for 3.11.0-SNAPSHOT.


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[cytoscape/cytoscape-gui-distribution] 77f05b: bump cy-rest to 3.12.2, bump cyChart to 0.3.1

2023-04-10 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 77f05be08f84a6b0279c817ea37e39f09eb1a981
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/77f05be08f84a6b0279c817ea37e39f09eb1a981
  Author: Mike Kucera 
  Date:   2023-04-10 (Mon, 10 Apr 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  bump cy-rest to 3.12.2, bump cyChart to 0.3.1


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[cytoscape/cytoscape-gui-distribution] 7d3e65: Create 3.10.0 release branch.

2023-04-10 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/release/3.10.0
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 7d3e65faa1584e14055d039f77ddfba7ba7e5a0a
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/7d3e65faa1584e14055d039f77ddfba7ba7e5a0a
  Author: Mike Kucera 
  Date:   2023-04-10 (Mon, 10 Apr 2023)

  Changed paths:
M application-metadata-impl/pom.xml
M assembly/pom.xml
M assembly/src/main/bin/cytoscape.bat
M assembly/src/main/bin/cytoscape.sh
M branding/pom.xml
M cmdline-impl/pom.xml
M diagnostics/pom.xml
M features/pom.xml
M integration-test/pom.xml
M launcher/pom.xml
M packaging/pom.xml
M pom.xml
M splash-launcher/pom.xml
M splash-updater-impl/pom.xml
M third-party/pom.xml

  Log Message:
  ---
  Create 3.10.0 release branch.


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[cytoscape/cytoscape-gui-distribution] 9d1873: bump mapSourceAndTarget version to 0.2.1

2023-04-10 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 9d1873a491a2f582173fb3c8e9c8350f5fb2f443
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/9d1873a491a2f582173fb3c8e9c8350f5fb2f443
  Author: Mike Kucera 
  Date:   2023-04-10 (Mon, 10 Apr 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  bump mapSourceAndTarget version to 0.2.1


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[cytoscape/cytoscape-gui-distribution] eba136: bump cx-support version to 2.8.0

2023-04-05 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: eba13623d271ca064adf0644579f3cfafa802430
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/eba13623d271ca064adf0644579f3cfafa802430
  Author: Mike Kucera 
  Date:   2023-04-05 (Wed, 05 Apr 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  bump cx-support version to 2.8.0


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[cytoscape/cytoscape-gui-distribution] 9e6560: removed -SNAPSHOT from cy-ndex-2 core app

2023-03-21 Thread 'Chris Churas' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 9e65601c58511d8b1f21ec08e76e10240b85b27d
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/9e65601c58511d8b1f21ec08e76e10240b85b27d
  Author: Chris Churas 
  Date:   2023-03-21 (Tue, 21 Mar 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  removed -SNAPSHOT from cy-ndex-2 core app


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[cytoscape/cytoscape-gui-distribution] 288fe7: bump analyzer version to 4.4.8

2023-03-20 Thread 'Yihang Xin' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 288fe7bede58c476f5d29576a0a2b3a713d01aeb
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/288fe7bede58c476f5d29576a0a2b3a713d01aeb
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2023-03-20 (Mon, 20 Mar 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  bump analyzer version to 4.4.8


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[cytoscape/cytoscape-gui-distribution] d12d99: Delete analyzer as core app

2023-03-20 Thread 'Yihang Xin' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: d12d99fc2ea45dfecfd492fe7996b51d8f731d48
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/d12d99fc2ea45dfecfd492fe7996b51d8f731d48
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2023-03-20 (Mon, 20 Mar 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Delete analyzer as core app


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[cytoscape/cytoscape-gui-distribution] 3b76a7: bumped up cy-ndex-2 app version to 3.7.0-SNAPSHOT....

2023-03-20 Thread 'Chris Churas' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 3b76a78ddf8a9786e7a6ae019d09f98aa61416bc
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/3b76a78ddf8a9786e7a6ae019d09f98aa61416bc
  Author: Chris Churas 
  Date:   2023-03-20 (Mon, 20 Mar 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  bumped up cy-ndex-2 app version to 3.7.0-SNAPSHOT. This version removes the 
export collection menu entries


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[cytoscape/cytoscape-gui-distribution] 8a28de: Update pom.xml

2023-03-13 Thread 'Yihang Xin' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 8a28dead77d39f06747836a326766997974c0e70
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/8a28dead77d39f06747836a326766997974c0e70
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2023-03-13 (Mon, 13 Mar 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update pom.xml


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[cytoscape/cytoscape-gui-distribution] 3c961b: CYTOSCAPE-13055 Remove jansi library from build

2023-03-09 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/release/3.10.0_BETA2
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 3c961b4e629da2e74de04f880dc25f0786955cc6
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/3c961b4e629da2e74de04f880dc25f0786955cc6
  Author: Mike Kucera 
  Date:   2023-03-09 (Thu, 09 Mar 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  CYTOSCAPE-13055 Remove jansi library from build


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[cytoscape/cytoscape-gui-distribution]

2023-03-09 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/feature/new_install_wizard_screens
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution

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[cytoscape/cytoscape-gui-distribution]

2023-03-09 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/CYTOSCAPE-13055
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution

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[cytoscape/cytoscape-gui-distribution] 34cbd6: CYTOSCAPE-13055 Remove jansi library from build

2023-03-09 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 34cbd66b752b921b904d59039355e4a12ae92e99
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/34cbd66b752b921b904d59039355e4a12ae92e99
  Author: Mike Kucera 
  Date:   2023-03-07 (Tue, 07 Mar 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  CYTOSCAPE-13055 Remove jansi library from build


  Commit: 2350fde8eb63c648b418984e7481bd9b9a5341a3
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/2350fde8eb63c648b418984e7481bd9b9a5341a3
  Author: Mike Kucera 
  Date:   2023-03-09 (Thu, 09 Mar 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Merge branch 'CYTOSCAPE-13055' into develop


Compare: 
https://github.com/cytoscape/cytoscape-gui-distribution/compare/5db2486b061f...2350fde8eb63

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[cytoscape/cytoscape-gui-distribution] 5db248: Remove scripting-impl. CYTOSCAPE-13056

2023-03-09 Thread 'Scooter Morris' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 5db2486b061fcae0ccc2309def0ecb5acc69b7ff
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/5db2486b061fcae0ccc2309def0ecb5acc69b7ff
  Author: Scooter Morris 
  Date:   2023-03-09 (Thu, 09 Mar 2023)

  Changed paths:
M features/src/main/resources/features.xml

  Log Message:
  ---
  Remove scripting-impl.  CYTOSCAPE-13056


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[cytoscape/cytoscape-gui-distribution] 34cbd6: CYTOSCAPE-13055 Remove jansi library from build

2023-03-07 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/CYTOSCAPE-13055
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 34cbd66b752b921b904d59039355e4a12ae92e99
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/34cbd66b752b921b904d59039355e4a12ae92e99
  Author: Mike Kucera 
  Date:   2023-03-07 (Tue, 07 Mar 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  CYTOSCAPE-13055 Remove jansi library from build


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[cytoscape/cytoscape-gui-distribution] e1c249: Branch for 3.10.0-BETA2

2023-02-24 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/release/3.10.0_BETA2
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: e1c249d588ae2c2d907f5b7a587f411331f0
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/e1c249d588ae2c2d907f5b7a587f411331f0
  Author: Mike Kucera 
  Date:   2023-02-24 (Fri, 24 Feb 2023)

  Changed paths:
M application-metadata-impl/pom.xml
M assembly/pom.xml
M assembly/src/main/bin/cytoscape.bat
M assembly/src/main/bin/cytoscape.sh
M branding/pom.xml
M cmdline-impl/pom.xml
M diagnostics/pom.xml
M features/pom.xml
M integration-test/pom.xml
M launcher/pom.xml
M packaging/pom.xml
M pom.xml
M splash-launcher/pom.xml
M splash-updater-impl/pom.xml
M third-party/pom.xml

  Log Message:
  ---
  Branch for 3.10.0-BETA2


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[cytoscape/cytoscape-gui-distribution]

2023-02-24 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/release/3.10.0_BETA2
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution

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[cytoscape/cytoscape-gui-distribution] 4a48b6: Add mapSourceAndTarget

2023-02-23 Thread 'Scooter Morris' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 4a48b698565615b588d2b0a419aacc0d42baa86d
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/4a48b698565615b588d2b0a419aacc0d42baa86d
  Author: Scooter Morris 
  Date:   2023-02-23 (Thu, 23 Feb 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Add mapSourceAndTarget


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[cytoscape/cytoscape-gui-distribution] 3da04d: Update pom.xml

2023-02-17 Thread 'Yihang Xin' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 3da04dade6cbe506efae013e5dbdb2b2efafe574
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/3da04dade6cbe506efae013e5dbdb2b2efafe574
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2023-02-17 (Fri, 17 Feb 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update pom.xml


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[cytoscape/cytoscape-gui-distribution] 5b041f: Branch for 3.10.0-BETA1

2023-02-03 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/release/3.10.0_BETA1
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 5b041f34039c68d4c35e6e48043223ad63dd2687
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/5b041f34039c68d4c35e6e48043223ad63dd2687
  Author: Mike Kucera 
  Date:   2023-02-03 (Fri, 03 Feb 2023)

  Changed paths:
M application-metadata-impl/pom.xml
M assembly/pom.xml
M assembly/src/main/bin/cytoscape.bat
M assembly/src/main/bin/cytoscape.sh
M branding/pom.xml
M cmdline-impl/pom.xml
M diagnostics/pom.xml
M features/pom.xml
M integration-test/pom.xml
M launcher/pom.xml
M packaging/pom.xml
M pom.xml
M splash-launcher/pom.xml
M splash-updater-impl/pom.xml
M third-party/pom.xml

  Log Message:
  ---
  Branch for 3.10.0-BETA1


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[cytoscape/cytoscape-gui-distribution] 52e1a6: Use new version of cyBrowser

2023-02-03 Thread 'Scooter Morris' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 52e1a698042337578901b1ed859f7a4cec7bc2e8
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/52e1a698042337578901b1ed859f7a4cec7bc2e8
  Author: Scooter Morris 
  Date:   2023-01-19 (Thu, 19 Jan 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Use new version of cyBrowser


  Commit: 288dcf874debfc1539beb93c9f0a47b9c1d6009a
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/288dcf874debfc1539beb93c9f0a47b9c1d6009a
  Author: Scooter Morris 
  Date:   2023-01-25 (Wed, 25 Jan 2023)

  Changed paths:
M packaging/src/main/install4j/Cytoscape.install4j

  Log Message:
  ---
  Merge branch 'develop' of github.com:cytoscape/cytoscape-gui-distribution 
into develop


  Commit: 34d39a7d964641a9b8b80cfac46c02d6d3a5a8a8
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/34d39a7d964641a9b8b80cfac46c02d6d3a5a8a8
  Author: Scooter Morris 
  Date:   2023-02-03 (Fri, 03 Feb 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Merge branch 'develop' of github.com:cytoscape/cytoscape-gui-distribution 
into develop


Compare: 
https://github.com/cytoscape/cytoscape-gui-distribution/compare/628f4d668945...34d39a7d9646

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[cytoscape/cytoscape-gui-distribution] 628f4d: Update cyREST and cx-support version.

2023-02-02 Thread 'Jing Chen' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 628f4d668945c64005190cf4a7e447cc330cea07
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/628f4d668945c64005190cf4a7e447cc330cea07
  Author: jingjingbic 
  Date:   2023-02-02 (Thu, 02 Feb 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update cyREST and cx-support version.


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[cytoscape/cytoscape-gui-distribution] 6821fb: install4j windows registry action to fix JavaFX sc...

2023-01-23 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 6821fba157692c540d9689dc9775feed4192d720
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/6821fba157692c540d9689dc9775feed4192d720
  Author: Mike Kucera 
  Date:   2023-01-23 (Mon, 23 Jan 2023)

  Changed paths:
M packaging/src/main/install4j/Cytoscape.install4j

  Log Message:
  ---
  install4j windows registry action to fix JavaFX scaling


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[cytoscape/cytoscape-gui-distribution] 7424af: CYTOSCAPE-12996 update file-transfer to v1.3

2023-01-17 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 7424af6385b45b90b580b786e5f4d49b83912877
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/7424af6385b45b90b580b786e5f4d49b83912877
  Author: Mike Kucera 
  Date:   2023-01-17 (Tue, 17 Jan 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  CYTOSCAPE-12996 update file-transfer to v1.3


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[cytoscape/cytoscape-gui-distribution] 8af81d: Update pom.xml

2023-01-16 Thread 'Yihang Xin' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 8af81d5e7845ec8c2d77833bec670668c20ecca0
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/8af81d5e7845ec8c2d77833bec670668c20ecca0
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2023-01-16 (Mon, 16 Jan 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update pom.xml


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[cytoscape/cytoscape-gui-distribution] 785fc1: Add "What's New" screen to install wizard.

2023-01-12 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 785fc136a0e2f05afd40d990316ca278bef95acb
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/785fc136a0e2f05afd40d990316ca278bef95acb
  Author: Mike Kucera 
  Date:   2022-12-20 (Tue, 20 Dec 2022)

  Changed paths:
A packaging/src/main/images/whatsnew/app_store.png
A packaging/src/main/images/whatsnew/app_st...@2x.png
A packaging/src/main/images/whatsnew/edge_labels.png
A packaging/src/main/images/whatsnew/edge_lab...@2x.png
A packaging/src/main/images/whatsnew/selection_lasso.png
A packaging/src/main/images/whatsnew/selection_la...@2x.png
A packaging/src/main/images/whatsnew/table_style.png
A packaging/src/main/images/whatsnew/table_st...@2x.png
M packaging/src/main/install4j/Cytoscape.install4j

  Log Message:
  ---
  Add "What's New" screen to install wizard.


  Commit: c7e153bb8e3777588692fef2128fc62d142c756d
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/c7e153bb8e3777588692fef2128fc62d142c756d
  Author: Mike Kucera 
  Date:   2022-12-20 (Tue, 20 Dec 2022)

  Changed paths:
M packaging/src/main/install4j/Cytoscape.install4j

  Log Message:
  ---
  Move checkboxes to a single screen in install wizard.


  Commit: 7a9d2a4a649f5c623912e62ecb399844c59e9872
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/7a9d2a4a649f5c623912e62ecb399844c59e9872
  Author: Mike Kucera 
  Date:   2022-12-21 (Wed, 21 Dec 2022)

  Changed paths:
M packaging/src/main/install4j/Cytoscape.install4j

  Log Message:
  ---
  Minor layout adjustment.


  Commit: 4ba83fdb2744311795e9a32fa4a03f509ac68c8b
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/4ba83fdb2744311795e9a32fa4a03f509ac68c8b
  Author: Mike Kucera 
  Date:   2022-12-21 (Wed, 21 Dec 2022)

  Changed paths:
M packaging/src/main/install4j/Cytoscape.install4j

  Log Message:
  ---
  Fix image paths.


  Commit: 10233ca5a1c3a3134c24ffb738ec2d5cbd5f66e5
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/10233ca5a1c3a3134c24ffb738ec2d5cbd5f66e5
  Author: Mike Kucera 
  Date:   2022-12-22 (Thu, 22 Dec 2022)

  Changed paths:
M packaging/src/main/install4j/Cytoscape.install4j

  Log Message:
  ---
  Update Java to 17.0.5


  Commit: d2d9ebc136f4f7e8e628a3aeecdaf221652a8362
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/d2d9ebc136f4f7e8e628a3aeecdaf221652a8362
  Author: Mike Kucera 
  Date:   2023-01-09 (Mon, 09 Jan 2023)

  Changed paths:
M assembly/pom.xml
M features/src/main/resources/features.xml

  Log Message:
  ---
  Merge branch 'develop' into feature/new_install_wizard_screens


  Commit: b25f323e80df95636406c3875e8ccd7f0f4cf186
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/b25f323e80df95636406c3875e8ccd7f0f4cf186
  Author: Mike Kucera 
  Date:   2023-01-09 (Mon, 09 Jan 2023)

  Changed paths:
M packaging/pom.xml
M packaging/src/main/install4j/Cytoscape.install4j

  Log Message:
  ---
  Upgrade to install4j 10


  Commit: 3e58e9b512bcdc042dfc5fee9a48d29ecd706db7
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/3e58e9b512bcdc042dfc5fee9a48d29ecd706db7
  Author: Mike Kucera 
  Date:   2023-01-12 (Thu, 12 Jan 2023)

  Changed paths:
M packaging/src/main/install4j/Cytoscape.install4j

  Log Message:
  ---
  Set DPI aware to true


Compare: 
https://github.com/cytoscape/cytoscape-gui-distribution/compare/1f37aa853b44...3e58e9b512bc

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[cytoscape/cytoscape-gui-distribution] 27f9e6: Integration of opencl into core

2023-01-09 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/feature/new_install_wizard_screens
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 27f9e66fd0dbb2ff7d2fbcb431c4f4fe2c7eea87
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/27f9e66fd0dbb2ff7d2fbcb431c4f4fe2c7eea87
  Author: Scooter Morris 
  Date:   2022-10-04 (Tue, 04 Oct 2022)

  Changed paths:
M assembly/pom.xml
M features/src/main/resources/features.xml

  Log Message:
  ---
  Integration of opencl into core


  Commit: b8b007cd18f00ac7873cf5d040a66f2aeabc70f6
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/b8b007cd18f00ac7873cf5d040a66f2aeabc70f6
  Author: Scooter Morris 
  Date:   2022-12-08 (Thu, 08 Dec 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Merge branch 'develop' into feature/opencl


  Commit: d7ae2393022102c3867af4d663009388aa068c51
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/d7ae2393022102c3867af4d663009388aa068c51
  Author: Scooter Morris 
  Date:   2022-12-15 (Thu, 15 Dec 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Use new cyBrowser


  Commit: 67997dc9e0c013c63ab66a87dde68f78ec940e76
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/67997dc9e0c013c63ab66a87dde68f78ec940e76
  Author: Scooter Morris 
  Date:   2022-12-16 (Fri, 16 Dec 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Use more recent version of network merge


  Commit: 1f37aa853b44cc860d1316ae9e9497aea90a20df
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/1f37aa853b44cc860d1316ae9e9497aea90a20df
  Author: Scooter Morris 
  Date:   2023-01-06 (Fri, 06 Jan 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Bump version of opencl-layout to 3.10.1


  Commit: d2d9ebc136f4f7e8e628a3aeecdaf221652a8362
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/d2d9ebc136f4f7e8e628a3aeecdaf221652a8362
  Author: Mike Kucera 
  Date:   2023-01-09 (Mon, 09 Jan 2023)

  Changed paths:
M assembly/pom.xml
M features/src/main/resources/features.xml

  Log Message:
  ---
  Merge branch 'develop' into feature/new_install_wizard_screens


  Commit: b25f323e80df95636406c3875e8ccd7f0f4cf186
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/b25f323e80df95636406c3875e8ccd7f0f4cf186
  Author: Mike Kucera 
  Date:   2023-01-09 (Mon, 09 Jan 2023)

  Changed paths:
M packaging/pom.xml
M packaging/src/main/install4j/Cytoscape.install4j

  Log Message:
  ---
  Upgrade to install4j 10


Compare: 
https://github.com/cytoscape/cytoscape-gui-distribution/compare/10233ca5a1c3...b25f323e80df

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[cytoscape/cytoscape-gui-distribution] 1f37aa: Bump version of opencl-layout to 3.10.1

2023-01-06 Thread 'Scooter Morris' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 1f37aa853b44cc860d1316ae9e9497aea90a20df
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/1f37aa853b44cc860d1316ae9e9497aea90a20df
  Author: Scooter Morris 
  Date:   2023-01-06 (Fri, 06 Jan 2023)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Bump version of opencl-layout to 3.10.1


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https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-gui-distribution/push/refs/heads/develop/67997d-1f37aa%40github.com.


[cytoscape/cytoscape-gui-distribution] 27f9e6: Integration of opencl into core

2023-01-06 Thread 'Scooter Morris' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 27f9e66fd0dbb2ff7d2fbcb431c4f4fe2c7eea87
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/27f9e66fd0dbb2ff7d2fbcb431c4f4fe2c7eea87
  Author: Scooter Morris 
  Date:   2022-10-04 (Tue, 04 Oct 2022)

  Changed paths:
M assembly/pom.xml
M features/src/main/resources/features.xml

  Log Message:
  ---
  Integration of opencl into core


  Commit: b8b007cd18f00ac7873cf5d040a66f2aeabc70f6
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/b8b007cd18f00ac7873cf5d040a66f2aeabc70f6
  Author: Scooter Morris 
  Date:   2022-12-08 (Thu, 08 Dec 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Merge branch 'develop' into feature/opencl


  Commit: d7ae2393022102c3867af4d663009388aa068c51
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/d7ae2393022102c3867af4d663009388aa068c51
  Author: Scooter Morris 
  Date:   2022-12-15 (Thu, 15 Dec 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Use new cyBrowser


  Commit: 67997dc9e0c013c63ab66a87dde68f78ec940e76
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/67997dc9e0c013c63ab66a87dde68f78ec940e76
  Author: Scooter Morris 
  Date:   2022-12-16 (Fri, 16 Dec 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Use more recent version of network merge


Compare: 
https://github.com/cytoscape/cytoscape-gui-distribution/compare/e2ab7f711224...67997dc9e0c0

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[cytoscape/cytoscape-gui-distribution] 10233c: Update Java to 17.0.5

2022-12-22 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/feature/new_install_wizard_screens
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 10233ca5a1c3a3134c24ffb738ec2d5cbd5f66e5
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/10233ca5a1c3a3134c24ffb738ec2d5cbd5f66e5
  Author: Mike Kucera 
  Date:   2022-12-22 (Thu, 22 Dec 2022)

  Changed paths:
M packaging/src/main/install4j/Cytoscape.install4j

  Log Message:
  ---
  Update Java to 17.0.5


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[cytoscape/cytoscape-gui-distribution] 785fc1: Add "What's New" screen to install wizard.

2022-12-22 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/feature/new_install_wizard_screens
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 785fc136a0e2f05afd40d990316ca278bef95acb
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/785fc136a0e2f05afd40d990316ca278bef95acb
  Author: Mike Kucera 
  Date:   2022-12-20 (Tue, 20 Dec 2022)

  Changed paths:
A packaging/src/main/images/whatsnew/app_store.png
A packaging/src/main/images/whatsnew/app_st...@2x.png
A packaging/src/main/images/whatsnew/edge_labels.png
A packaging/src/main/images/whatsnew/edge_lab...@2x.png
A packaging/src/main/images/whatsnew/selection_lasso.png
A packaging/src/main/images/whatsnew/selection_la...@2x.png
A packaging/src/main/images/whatsnew/table_style.png
A packaging/src/main/images/whatsnew/table_st...@2x.png
M packaging/src/main/install4j/Cytoscape.install4j

  Log Message:
  ---
  Add "What's New" screen to install wizard.


  Commit: c7e153bb8e3777588692fef2128fc62d142c756d
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/c7e153bb8e3777588692fef2128fc62d142c756d
  Author: Mike Kucera 
  Date:   2022-12-20 (Tue, 20 Dec 2022)

  Changed paths:
M packaging/src/main/install4j/Cytoscape.install4j

  Log Message:
  ---
  Move checkboxes to a single screen in install wizard.


  Commit: 7a9d2a4a649f5c623912e62ecb399844c59e9872
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/7a9d2a4a649f5c623912e62ecb399844c59e9872
  Author: Mike Kucera 
  Date:   2022-12-21 (Wed, 21 Dec 2022)

  Changed paths:
M packaging/src/main/install4j/Cytoscape.install4j

  Log Message:
  ---
  Minor layout adjustment.


  Commit: 4ba83fdb2744311795e9a32fa4a03f509ac68c8b
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/4ba83fdb2744311795e9a32fa4a03f509ac68c8b
  Author: Mike Kucera 
  Date:   2022-12-21 (Wed, 21 Dec 2022)

  Changed paths:
M packaging/src/main/install4j/Cytoscape.install4j

  Log Message:
  ---
  Fix image paths.


Compare: 
https://github.com/cytoscape/cytoscape-gui-distribution/compare/785fc136a0e2%5E...4ba83fdb2744

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[cytoscape/cytoscape-gui-distribution] d7ae23: Use new cyBrowser

2022-12-16 Thread 'Scooter Morris' via cytoscape-cvs
  Branch: refs/heads/feature/opencl
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: d7ae2393022102c3867af4d663009388aa068c51
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/d7ae2393022102c3867af4d663009388aa068c51
  Author: Scooter Morris 
  Date:   2022-12-15 (Thu, 15 Dec 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Use new cyBrowser


  Commit: 67997dc9e0c013c63ab66a87dde68f78ec940e76
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/67997dc9e0c013c63ab66a87dde68f78ec940e76
  Author: Scooter Morris 
  Date:   2022-12-16 (Fri, 16 Dec 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Use more recent version of network merge


Compare: 
https://github.com/cytoscape/cytoscape-gui-distribution/compare/b8b007cd18f0...67997dc9e0c0

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[cytoscape/cytoscape-gui-distribution] 9c481d: Update pom.xml

2022-12-08 Thread 'Scooter Morris' via cytoscape-cvs
  Branch: refs/heads/feature/opencl
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 9c481d8efa15f568750f3f73768dcd2212303764
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/9c481d8efa15f568750f3f73768dcd2212303764
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2022-10-06 (Thu, 06 Oct 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update pom.xml


  Commit: d8409860ac87a20b6fb43ddd516d3ae81f0a7cdc
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/d8409860ac87a20b6fb43ddd516d3ae81f0a7cdc
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2022-11-07 (Mon, 07 Nov 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update pom.xml


  Commit: c5f641cf6be41a665552334d3f481aff7994a290
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/c5f641cf6be41a665552334d3f481aff7994a290
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2022-11-07 (Mon, 07 Nov 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update pom.xml


  Commit: 7a643e3e25ecf3c9418a00865863742eec1f7750
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/7a643e3e25ecf3c9418a00865863742eec1f7750
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2022-11-07 (Mon, 07 Nov 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update pom.xml


  Commit: 5e998aa0e9abfcd75983c72d983646e18a866675
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/5e998aa0e9abfcd75983c72d983646e18a866675
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2022-11-07 (Mon, 07 Nov 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update pom.xml


  Commit: 5fd530912484d3f8a67bb7c834a5a12c0ad04fe9
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/5fd530912484d3f8a67bb7c834a5a12c0ad04fe9
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2022-11-15 (Tue, 15 Nov 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update pom.xml


  Commit: 3e1b08b63cff88317a894e844942336930cf7936
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/3e1b08b63cff88317a894e844942336930cf7936
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2022-11-20 (Sun, 20 Nov 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update pom.xml


  Commit: e2ab7f7112240216a7e10b7fc0d4a0c9da54c9fc
      
https://github.com/cytoscape/cytoscape-gui-distribution/commit/e2ab7f7112240216a7e10b7fc0d4a0c9da54c9fc
  Author: Scooter Morris 
  Date:   2022-11-28 (Mon, 28 Nov 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Bump version of JavaFX


  Commit: b8b007cd18f00ac7873cf5d040a66f2aeabc70f6
      
https://github.com/cytoscape/cytoscape-gui-distribution/commit/b8b007cd18f00ac7873cf5d040a66f2aeabc70f6
  Author: Scooter Morris 
  Date:   2022-12-08 (Thu, 08 Dec 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Merge branch 'develop' into feature/opencl


Compare: 
https://github.com/cytoscape/cytoscape-gui-distribution/compare/27f9e66fd0db...b8b007cd18f0

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[cytoscape/cytoscape-gui-distribution] e2ab7f: Bump version of JavaFX

2022-11-28 Thread 'Scooter Morris' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: e2ab7f7112240216a7e10b7fc0d4a0c9da54c9fc
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/e2ab7f7112240216a7e10b7fc0d4a0c9da54c9fc
  Author: Scooter Morris 
  Date:   2022-11-28 (Mon, 28 Nov 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Bump version of JavaFX


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[cytoscape/cytoscape-gui-distribution] 3e1b08: Update pom.xml

2022-11-20 Thread 'Yihang Xin' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 3e1b08b63cff88317a894e844942336930cf7936
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/3e1b08b63cff88317a894e844942336930cf7936
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2022-11-20 (Sun, 20 Nov 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update pom.xml


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[cytoscape/cytoscape-gui-distribution] 5fd530: Update pom.xml

2022-11-15 Thread 'Yihang Xin' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 5fd530912484d3f8a67bb7c834a5a12c0ad04fe9
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/5fd530912484d3f8a67bb7c834a5a12c0ad04fe9
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2022-11-15 (Tue, 15 Nov 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update pom.xml


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[cytoscape/cytoscape-gui-distribution] 5e998a: Update pom.xml

2022-11-07 Thread 'Yihang Xin' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 5e998aa0e9abfcd75983c72d983646e18a866675
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/5e998aa0e9abfcd75983c72d983646e18a866675
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2022-11-07 (Mon, 07 Nov 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update pom.xml


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[cytoscape/cytoscape-gui-distribution] 7a643e: Update pom.xml

2022-11-07 Thread 'Yihang Xin' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 7a643e3e25ecf3c9418a00865863742eec1f7750
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/7a643e3e25ecf3c9418a00865863742eec1f7750
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2022-11-07 (Mon, 07 Nov 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update pom.xml


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[cytoscape/cytoscape-gui-distribution] c5f641: Update pom.xml

2022-11-07 Thread 'Yihang Xin' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: c5f641cf6be41a665552334d3f481aff7994a290
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/c5f641cf6be41a665552334d3f481aff7994a290
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2022-11-07 (Mon, 07 Nov 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update pom.xml


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[cytoscape/cytoscape-gui-distribution] d84098: Update pom.xml

2022-11-07 Thread 'Yihang Xin' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: d8409860ac87a20b6fb43ddd516d3ae81f0a7cdc
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/d8409860ac87a20b6fb43ddd516d3ae81f0a7cdc
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2022-11-07 (Mon, 07 Nov 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update pom.xml


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[cytoscape/cytoscape-gui-distribution] 9c481d: Update pom.xml

2022-10-06 Thread 'Yihang Xin' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 9c481d8efa15f568750f3f73768dcd2212303764
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/9c481d8efa15f568750f3f73768dcd2212303764
  Author: Yihang Xin <46608109+yiha...@users.noreply.github.com>
  Date:   2022-10-06 (Thu, 06 Oct 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update pom.xml


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[cytoscape/cytoscape-gui-distribution] 27f9e6: Integration of opencl into core

2022-10-04 Thread 'Scooter Morris' via cytoscape-cvs
  Branch: refs/heads/feature/opencl
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 27f9e66fd0dbb2ff7d2fbcb431c4f4fe2c7eea87
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/27f9e66fd0dbb2ff7d2fbcb431c4f4fe2c7eea87
  Author: Scooter Morris 
  Date:   2022-10-04 (Tue, 04 Oct 2022)

  Changed paths:
M assembly/pom.xml
M features/src/main/resources/features.xml

  Log Message:
  ---
  Integration of opencl into core


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[cytoscape/cytoscape-gui-distribution] 58ea62: Update to latest version of cyBrowser

2022-10-04 Thread 'Scooter Morris' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 58ea62f33f94bde12a60a273d775bd714549a80b
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/58ea62f33f94bde12a60a273d775bd714549a80b
  Author: Scooter Morris 
  Date:   2022-10-03 (Mon, 03 Oct 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update to latest version of cyBrowser


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[cytoscape/cytoscape-gui-distribution] 47666e: Use new opencl jars

2022-09-30 Thread 'Scooter Morris' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 47666e7c0841c60210b5cbb2bd93beeceb236a00
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/47666e7c0841c60210b5cbb2bd93beeceb236a00
  Author: Scooter Morris 
  Date:   2022-09-30 (Fri, 30 Sep 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Use new opencl jars


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[cytoscape/cytoscape-gui-distribution] 683890: Don't load micluster as a bundle.

2022-09-27 Thread 'Scooter Morris' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 683890d8caa86e083875d48a90c3d463264b2952
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/683890d8caa86e083875d48a90c3d463264b2952
  Author: Scooter Morris 
  Date:   2022-09-27 (Tue, 27 Sep 2022)

  Changed paths:
M features/src/main/resources/features.xml

  Log Message:
  ---
  Don't load micluster as a bundle.


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[cytoscape/cytoscape-gui-distribution] 36b8e1: Update to use newer CyBrowser

2022-09-22 Thread 'Scooter Morris' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 36b8e1763aa460714c45578f93abc2e7a17d6c09
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/36b8e1763aa460714c45578f93abc2e7a17d6c09
  Author: Scooter Morris 
  Date:   2022-09-22 (Thu, 22 Sep 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update to use newer CyBrowser


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[cytoscape/cytoscape-gui-distribution] 633f5e: Update Cytoscape.install4j

2022-09-18 Thread 'Gary Bader' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 633f5e003b8ad746681c9edf82418a3ae39d4e82
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/633f5e003b8ad746681c9edf82418a3ae39d4e82
  Author: Gary Bader 
  Date:   2022-09-18 (Sun, 18 Sep 2022)

  Changed paths:
M packaging/src/main/install4j/Cytoscape.install4j

  Log Message:
  ---
  Update Cytoscape.install4j

correct spelling error Cytoscaspe -> Cytoscape


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[cytoscape/cytoscape-gui-distribution] 93c7f3: added organism; confirmed size and thumbnail

2022-09-15 Thread 'Alexander Pico' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 93c7f3dd063bd71c79c6465af5200d12a36823d8
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/93c7f3dd063bd71c79c6465af5200d12a36823d8
  Author: Alexander Pico 
  Date:   2022-09-15 (Thu, 15 Sep 2022)

  Changed paths:
M assembly/src/main/resources/sampleData/galFiltered.cys

  Log Message:
  ---
  added organism; confirmed size and thumbnail


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[cytoscape/cytoscape-gui-distribution] 94b51f: Fixes CSD-809: cys size and thumbnail

2022-09-15 Thread 'Alexander Pico' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: 94b51fde0567f5cc4ef65072d9ede7bffdeb633b
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/94b51fde0567f5cc4ef65072d9ede7bffdeb633b
  Author: Alexander Pico 
  Date:   2022-09-15 (Thu, 15 Sep 2022)

  Changed paths:
M assembly/src/main/resources/sampleData/sessions/Yeast Perturbation.cys

  Log Message:
  ---
  Fixes CSD-809: cys size and thumbnail


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[cytoscape/cytoscape-gui-distribution] d981a9: Update cy-rest version to 3.13.1-SNAPSHOT

2022-09-06 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: d981a9e3bef09c42cc5a98899f35682c25a766f3
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/d981a9e3bef09c42cc5a98899f35682c25a766f3
  Author: Mike Kucera 
  Date:   2022-09-06 (Tue, 06 Sep 2022)

  Changed paths:
M assembly/pom.xml

  Log Message:
  ---
  Update cy-rest version to 3.13.1-SNAPSHOT


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[cytoscape/cytoscape-gui-distribution] a4ee60: CYTOSCAPE-12459 Fix launching Cytoscape by double-...

2022-08-25 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: a4ee60f28d95dd813ecf6a92e097d37321e5ca71
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/a4ee60f28d95dd813ecf6a92e097d37321e5ca71
  Author: Mike Kucera 
  Date:   2022-08-25 (Thu, 25 Aug 2022)

  Changed paths:
M packaging/src/main/install4j/Cytoscape.install4j

  Log Message:
  ---
  CYTOSCAPE-12459 Fix launching Cytoscape by double-clicking cys file on
arm macs.


  Commit: 71655540347a93aff0943470f786d7d1cb442a2e
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/71655540347a93aff0943470f786d7d1cb442a2e
  Author: Mike Kucera 
  Date:   2022-08-25 (Thu, 25 Aug 2022)

  Changed paths:
M assembly/src/main/resources/sampleData/sessions/Yeast Perturbation.cys

  Log Message:
  ---
  Merge branch 'develop' of 
g...@github.com:cytoscape/cytoscape-gui-distribution.git into develop


Compare: 
https://github.com/cytoscape/cytoscape-gui-distribution/compare/fca6efe52dc5...71655540347a

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[cytoscape/cytoscape-gui-distribution] fca6ef: Fixes #12923

2022-08-25 Thread 'Alexander Pico' via cytoscape-cvs
  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-gui-distribution
  Commit: fca6efe52dc5ba65f672a7d668cc2ef1fb6f8cea
  
https://github.com/cytoscape/cytoscape-gui-distribution/commit/fca6efe52dc5ba65f672a7d668cc2ef1fb6f8cea
  Author: Alexander Pico 
  Date:   2022-08-25 (Thu, 25 Aug 2022)

  Changed paths:
M assembly/src/main/resources/sampleData/sessions/Yeast Perturbation.cys

  Log Message:
  ---
  Fixes #12923


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