Re: [deal.II] step-1 Error
I'm using version 9.0.0 of deal.ii. I have an older MacBook and it won't update past iOS 10.13.6. I downloaded the .dmg file and opened it/moved it into my applications but I haven't done anything else besides try to run the first example. On Tuesday, September 22, 2020 at 6:05:23 AM UTC-6 luca@gmail.com wrote: > If he’s running from the deal.II terminal, he should have the module > command (it is part of the spack installation). > > The deal.II terminal exports the paths so that the module command is > there. What version of the deal.II package is he using? On my system, this > is the output I get: > > > > bash-3.2$ module avail > --- > /Applications/deal.II.app/Contents/Resources/spack/share/spack/modules/darwin-catalina-x86_64 > > > adol-c/2.7.2 hwloc/1.11.11 numdiff/5.9.0 xz/5.2.5 > arpack-ng/3.7.0-openblas hypre/2.18.2-openblas oce/0.18.3 zlib/1.2.11 > assimp/4.0.1 intel-tbb/2020.2 openblas/0.3.10 > autoconf-archive/2019.01.06 libc/1.0 openmpi/3.1.6 > autoconf/2.69 libffi/3.3 openssl/1.1.1g > automake/1.16.2 libsigsegv/2.12 p4est/2.2 > boost/1.73.0 libtool/2.4.6 parmetis/4.0.3 > bzip2/1.0.8 libxml2/2.9.10 perl/5.18.4 > cmake/3.17.1 m4/1.4.18 petsc/3.13.1-openblas-py2-py3 > dealii/9.2.0-openblas-py2-py3 matio/1.5.13 pkgconf/1.7.3 > diffutils/3.7 metis/5.1.0 python/3.7.7 > environment-modules/4.5.1 mpc/1.1.0 readline/8.0 > expat/2.2.9 mpfr/4.0.2 slepc/3.13.3-openblas-py2-py3 > gdbm/1.18.1 mumps/5.2.0-openblas sqlite/3.31.1 > gettext/0.20.2 muparser/2.2.6.1 suite-sparse/5.3.0-openblas > ginkgo/1.1.0 nanoflann/1.2.3 sundials/3.2.1 > glm/0.9.7.1 ncurses/6.2 superlu-dist/6.3.0-openblas > gmp/6.1.2 netcdf-c/4.7.3 symengine/0.6.0 > gmsh/4.5.4-openblas netcdf-cxx/4.2 tar/1.32 > googletest/1.10.0 netgen/5.3.1 tcl/8.6.8 > gsl/2.5 netlib-scalapack/2.0.2-openblas tetgen/1.5.0 > hdf5/1.10.6 ninja/1.10.0-py2-py3 trilinos/12.18.1-openblas > bash-3.2$ > > > > > On 21 Sep 2020, at 22:51, Wolfgang Bangerth > wrote: > > > > > > Hi Luca, > > > >> Are you running the terminal, or the deal.II application? > >> When you run the deal.II application, you are dropped into a terminal > (with instructions) to run deal.II examples. Including how to set up your > bashrc (or zshrc) to point to the deal.II > >> Installation/the module command. > > > > He's running in the terminal that shows all of the instructions. The > problem is not that 'module load dealii' doesn't know how to load deal.II, > but that the 'module' command doesn't seem to exist on his system. That's > what the error message says: > > bash: module: command not found > > > > I can't seem to find any information (but also don't know where to look) > on how one can install the 'module' command or, more generally, which > general package 'module' would actually come from. > > > > Any ideas? > > > > Best > > W. > > > > -- > > > > Wolfgang Bangerth email: bang...@colostate.edu > > www: http://www.math.colostate.edu/~bangerth/ > > > > -- > > The deal.II project is located at http://www.dealii.org/ > > For mailing list/forum options, see > https://groups.google.com/d/forum/dealii?hl=en > > --- You received this message because you are subscribed to the Google > Groups "deal.II User Group" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to dealii+un...@googlegroups.com. > > To view this discussion on the web visit > https://groups.google.com/d/msgid/dealii/98392d90-dbd8-8213-26f8-6a0c3c844623%40colostate.edu > . > > -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to dealii+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/dealii/7fea9f6d-86bd-4090-b4e2-f2c66b95b692n%40googlegroups.com.
Re: [deal.II] step-1 Error
I've looked and wasn't able to find much. Does anyone know how to install this command on a Mac? On Friday, September 18, 2020 at 3:43:17 PM UTC-6 Wolfgang Bangerth wrote: > On 9/18/20 3:37 PM, Scott Ziegler wrote: > > Thanks for the response! I might be misunderstanding, but in my > directory for > > step-1 I tried running the command exactly as "module load dealii" and I > just > > get "bash: module: command not found" in return. What am I doing wrong? > > Oh, it doesn't know the 'module' command. It's not that it doesn't know > the > module it's trying to load. Can you check how one would install the > 'module' > command? > > Best > W. > > -- > > Wolfgang Bangerth email: bang...@colostate.edu > www: http://www.math.colostate.edu/~bangerth/ > > -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to dealii+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/dealii/18a69e90-184c-466f-b646-636095b16c9en%40googlegroups.com.
Re: [deal.II] step-1 Error
Thanks for the response! I might be misunderstanding, but in my directory for step-1 I tried running the command exactly as "module load dealii" and I just get "bash: module: command not found" in return. What am I doing wrong? On Wednesday, August 26, 2020 at 12:14:41 PM UTC-6 luca@gmail.com wrote: > The 9.0.0 image contains a spack installation. Can you run "module load > dealii" before trying to run? > > Luca. > > Il giorno mer 26 ago 2020 alle 19:51 Scott Ziegler < > scot...@rams.colostate.edu> ha scritto: > >> Hello, >> >> I tried running the first tutorial on my machine and I am getting an >> error message I don't understand. The "cmake step-1.cc ." and "make >> step-1.cc" commands ran fine, but when I try "make run step-1.cc" I get the >> following error: >> >> *Scanning dependencies of target step-1* >> >> [ 33%] Building CXX object CMakeFiles/step-1.dir/step-1.cc.o >> >> [ 66%] *Linking CXX executable step-1* >> >> [ 66%] Built target step-1 >> >> *Scanning dependencies of target run* >> >> [100%] *Run step-1 with Debug configuration* >> >> dyld: Library not loaded: libiomp5.dylib >> >> Referenced from: >> /Applications/deal.II-9.0.0.app/Contents/Resources/spack/opt/spack/darwin-highsierra-x86_64/clang-6.0.0/assimp-4.0.1-pdlrx32676yct2pztierxgvynk5gx277/lib/libassimp.4.dylib >> >> Reason: image not found >> >> make[3]: *** [CMakeFiles/run] Abort trap: 6 >> >> make[2]: *** [CMakeFiles/run.dir/all] Error 2 >> >> make[1]: *** [CMakeFiles/run.dir/rule] Error 2 >> >> make: *** [run] Error 2 >> >> >> I am running an older version of deal.ii (deal.ii.9.0.0) because the >> latest version wasn't compatible with my laptop. I have a 2012 MacBook Pro >> running macOS 10.13.6. Any help would be greatly appreciated, thank you. >> >> -- >> The deal.II project is located at http://www.dealii.org/ >> For mailing list/forum options, see >> https://groups.google.com/d/forum/dealii?hl=en >> --- >> You received this message because you are subscribed to the Google Groups >> "deal.II User Group" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to dealii+un...@googlegroups.com. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/dealii/b46da6bf-895b-4cb2-b5aa-c60845f85c61n%40googlegroups.com >> >> <https://groups.google.com/d/msgid/dealii/b46da6bf-895b-4cb2-b5aa-c60845f85c61n%40googlegroups.com?utm_medium=email_source=footer> >> . >> > -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to dealii+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/dealii/6d79eb30-84bf-4419-964b-5747beefb15fn%40googlegroups.com.
[deal.II] step-1 Error
Hello, I tried running the first tutorial on my machine and I am getting an error message I don't understand. The "cmake step-1.cc ." and "make step-1.cc" commands ran fine, but when I try "make run step-1.cc" I get the following error: *Scanning dependencies of target step-1* [ 33%] Building CXX object CMakeFiles/step-1.dir/step-1.cc.o [ 66%] *Linking CXX executable step-1* [ 66%] Built target step-1 *Scanning dependencies of target run* [100%] *Run step-1 with Debug configuration* dyld: Library not loaded: libiomp5.dylib Referenced from: /Applications/deal.II-9.0.0.app/Contents/Resources/spack/opt/spack/darwin-highsierra-x86_64/clang-6.0.0/assimp-4.0.1-pdlrx32676yct2pztierxgvynk5gx277/lib/libassimp.4.dylib Reason: image not found make[3]: *** [CMakeFiles/run] Abort trap: 6 make[2]: *** [CMakeFiles/run.dir/all] Error 2 make[1]: *** [CMakeFiles/run.dir/rule] Error 2 make: *** [run] Error 2 I am running an older version of deal.ii (deal.ii.9.0.0) because the latest version wasn't compatible with my laptop. I have a 2012 MacBook Pro running macOS 10.13.6. Any help would be greatly appreciated, thank you. -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to dealii+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/dealii/b46da6bf-895b-4cb2-b5aa-c60845f85c61n%40googlegroups.com.
