Bug#840725: marked as done (libhmsbeagle: FTBFS and bd-uninstallable almost everywhere)

2016-10-16 Thread Debian Bug Tracking System 
Your message dated Sun, 16 Oct 2016 13:34:28 +
with message-id 
and subject line Bug#840725: fixed in libhmsbeagle 2.1.2+20160831-2
has caused the Debian Bug report #840725,
regarding libhmsbeagle: FTBFS and bd-uninstallable almost everywhere
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
840725: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=840725
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: libhmsbeagle
Version: 2.1.2+20160525-1
Severity: serious

Hi,

Your package failed to build on i386 with:

/«BUILDDIR»/libhmsbeagle-2.1.2+20160525/libhmsbeagle/GPU/GPUInterface.h: In 
member function 'void opencl_device::GPUInterface::PrintfDeviceVector(GPUPtr, 
int, double, int*, Real)':
/«BUILDDIR»/libhmsbeagle-2.1.2+20160525/libhmsbeagle/GPU/GPUInterface.h:188:55: 
error: there are no arguments to 'malloc' that depend on a template parameter, 
so a declaration of 'malloc' must be available [-fpermissive]
  Real* hPtr = (Real*) malloc(sizeof(Real) * length);
   ^


Also, the package is bd-uninstallable everywhere else because libpoclu-dev
is not available.

See https://buildd.debian.org/status/package.php?p=libhmsbeagle

Emilio

-- System Information:
Debian Release: stretch/sid
  APT prefers unstable
  APT policy: (800, 'unstable'), (700, 'experimental'), (650, 'testing'), (500, 
'unstable-debug')
Architecture: amd64 (x86_64)
Foreign Architectures: i386, armhf

Kernel: Linux 4.7.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_GB.utf8, LC_CTYPE=en_GB.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
--- End Message ---
--- Begin Message ---
Source: libhmsbeagle
Source-Version: 2.1.2+20160831-2

We believe that the bug you reported is fixed in the latest version of
libhmsbeagle, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 840...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille  (supplier of updated libhmsbeagle package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 16 Oct 2016 15:08:44 +0200
Source: libhmsbeagle
Binary: libhmsbeagle-dev libhmsbeagle1v5 libhmsbeagle-java
Architecture: source amd64
Version: 2.1.2+20160831-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Andreas Tille 
Description:
 libhmsbeagle-dev - High-performance lib for Bayesian and Maximum Likelihood 
phylogen
 libhmsbeagle-java - High-performance lib for Bayesian and Maximum Likelihood 
phylogen
 libhmsbeagle1v5 - High-performance lib for Bayesian and Maximum Likelihood 
phylogen
Closes: 840725
Changes:
 libhmsbeagle (2.1.2+20160831-2) unstable; urgency=medium
 .
   * Skip tests on other architectures than amd64.
 Closes: #840725
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Bug#840725: marked as done (libhmsbeagle: FTBFS and bd-uninstallable almost everywhere)

2016-10-15 Thread Debian Bug Tracking System 
Your message dated Sat, 15 Oct 2016 12:25:47 +
with message-id 
and subject line Bug#840725: fixed in libhmsbeagle 2.1.2+20160831-1
has caused the Debian Bug report #840725,
regarding libhmsbeagle: FTBFS and bd-uninstallable almost everywhere
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
840725: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=840725
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: libhmsbeagle
Version: 2.1.2+20160525-1
Severity: serious

Hi,

Your package failed to build on i386 with:

/«BUILDDIR»/libhmsbeagle-2.1.2+20160525/libhmsbeagle/GPU/GPUInterface.h: In 
member function 'void opencl_device::GPUInterface::PrintfDeviceVector(GPUPtr, 
int, double, int*, Real)':
/«BUILDDIR»/libhmsbeagle-2.1.2+20160525/libhmsbeagle/GPU/GPUInterface.h:188:55: 
error: there are no arguments to 'malloc' that depend on a template parameter, 
so a declaration of 'malloc' must be available [-fpermissive]
  Real* hPtr = (Real*) malloc(sizeof(Real) * length);
   ^


Also, the package is bd-uninstallable everywhere else because libpoclu-dev
is not available.

See https://buildd.debian.org/status/package.php?p=libhmsbeagle

Emilio

-- System Information:
Debian Release: stretch/sid
  APT prefers unstable
  APT policy: (800, 'unstable'), (700, 'experimental'), (650, 'testing'), (500, 
'unstable-debug')
Architecture: amd64 (x86_64)
Foreign Architectures: i386, armhf

Kernel: Linux 4.7.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_GB.utf8, LC_CTYPE=en_GB.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
--- End Message ---
--- Begin Message ---
Source: libhmsbeagle
Source-Version: 2.1.2+20160831-1

We believe that the bug you reported is fixed in the latest version of
libhmsbeagle, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 840...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille  (supplier of updated libhmsbeagle package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 15 Oct 2016 13:15:32 +0200
Source: libhmsbeagle
Binary: libhmsbeagle-dev libhmsbeagle1v5 libhmsbeagle-java
Architecture: source amd64
Version: 2.1.2+20160831-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Andreas Tille 
Description:
 libhmsbeagle-dev - High-performance lib for Bayesian and Maximum Likelihood 
phylogen
 libhmsbeagle-java - High-performance lib for Bayesian and Maximum Likelihood 
phylogen
 libhmsbeagle1v5 - High-performance lib for Bayesian and Maximum Likelihood 
phylogen
Closes: 827120 840725
Changes:
 libhmsbeagle (2.1.2+20160831-1) unstable; urgency=medium
 .
   * New upstream commit
   * d/watch pointing to Github
   * ocl-icd-opencl-dev now provided by khronos-opencl-clhpp
 Closes: #840725
   * Fixed symlink
 Closes: #827120
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libhmsbeagle1v5_2.1.2+20160831-1_amd64.deb
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