Your message dated Wed, 14 Feb 2018 12:34:25 +0000
with message-id <e1elwgx-0009e7...@fasolo.debian.org>
and subject line Bug#890303: fixed in htslib 1.7-2
has caused the Debian Bug report #890303,
regarding htslib: autopokgtest failure
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
890303: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=890303
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: htslib
Version: 1.7-1
User: ubuntu-de...@lists.ubuntu.com
Usertags: origin-ubuntu bionic autopkgtest
Hi Maintainer
Since the upload of 1.7-1, htslib's autopkgtests have been
failing [1] with the following error:
autopkgtest [02:32:04]: test run-unit-test: [-----------------------
make: ./version.sh: Command not found
make: ./version.sh: Command not found
gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o bgzip.o bgzip.c
gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c
gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o knetfile.o knetfile.c
gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o kstring.o kstring.c
gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o bcf_sr_sort.o bcf_sr_sort.c
gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o bgzf.o bgzf.c
gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o errmod.o errmod.c
gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c
gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o hfile.o hfile.c
gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o hfile_net.o hfile_net.c
echo '#define HTS_VERSION ""' > version.h
gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o hts.o hts.c
make: *** No rule to make target 'os/rand.c', needed by 'hts_os.o'. Stop.
autopkgtest [02:32:10]: test run-unit-test: -----------------------]
autopkgtest [02:32:10]: test run-unit-test: - - - - - - - - - - results
- - - - - - - - - -
run-unit-test FAIL non-zero exit status 2
Regards
Graham
[1] https://ci.debian.net/packages/h/htslib/unstable/amd64/
--- End Message ---
--- Begin Message ---
Source: htslib
Source-Version: 1.7-2
We believe that the bug you reported is fixed in the latest version of
htslib, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 890...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated htslib package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 14 Feb 2018 13:13:18 +0100
Source: htslib
Binary: libhts2 libhts-dev libhts-private-dev htslib-test tabix
Architecture: source
Version: 1.7-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
htslib-test - Test data for HTSlib
libhts-dev - development files for the HTSlib
libhts-private-dev - private development files for the HTSlib (use with care)
libhts2 - C library for high-throughput sequencing data formats
tabix - generic indexer for TAB-delimited genome position files
Closes: 890303
Changes:
htslib (1.7-2) unstable; urgency=medium
.
* Move all needed files into htslib-test package
Closes: #890303
* Document how to test the package
* Update symbols file
Checksums-Sha1:
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Files:
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81367b3fb8cd2d161da231e521d76e3b 13800 science optional
htslib_1.7-2.debian.tar.xz
65c9d082a3dd94dd4b56470f0ac8a299 13468 science optional
htslib_1.7-2_source.buildinfo
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